Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq292 149 6e-31 seq101 131 2e-25 seq376 104 2e-17 seq1820 102 8e-17 seq9 93.3 4e-14 seq63 89.7 5e-13 seq86 82.4 7e-11 >seq292 Length=3256830 Score = 149 bits (164), Expect = 6e-31 Identities = 161/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| ||||||||||| || ||| | | | || || || Sbjct 1957762 AAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGACAGAGTGCGGCCA-TCTTCCAG 1957820 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| |||||||| |||| || |||||||||||||| |||||||| ||||| || ||| Sbjct 1957821 CTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTATCTTGGAT 1957880 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | | ||||| ||||| ||||||| || |||| ||||| ||| |||| Sbjct 1957881 -TTTGGCTTTAACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGC 1957939 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || || || || |||||||| Sbjct 1957940 CCGTCAGGGTCTTCACAAAGATCTGCAT 1957967 >seq101 Length=4626942 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || |||||||| | ||| | | | || || ||||||||||| Sbjct 1982554 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 1982612 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| |||| ||||||||| || |||||||| ||||| || |||||| ||| Sbjct 1982613 GGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTT 1982672 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| |||| ||||| || | ||||| ||| ||||||||||| || Sbjct 1982673 CACATTTTCGATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGT 1982732 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 1982733 CTTCACGAAGATCTGCATG 1982751 Score = 131 bits (144), Expect = 2e-25 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||||||||| || || |||||||| | ||| | | | || || |||| Sbjct 1982775 ATGCAGGGTGGACTCTTTTTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCT 1982833 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || |||| |||| ||||||||| || |||||||| ||||| || ||||| Sbjct 1982834 GCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCT 1982893 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | || | |||||| |||| ||||| || | ||| | ||| ||||||| Sbjct 1982894 TGGCCTTCACATTTTCGATGGTGTCGCTGGGTTCCACTTCCAGGGTTATGGTCTTGCCGG 1982953 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || ||||| ||||||||| Sbjct 1982954 TCAGGGTCTTCACGAAGATCTGCATG 1982979 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || |||||||| | ||| | | | || || |||| Sbjct 1983003 ATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCT 1983061 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || |||| |||| ||||||||| || |||||||| ||||| || ||||| Sbjct 1983062 GCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCTTGGATCT 1983121 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | || | ||||| |||| ||||| || | ||||| ||| ||||| | Sbjct 1983122 TGGCCTTCACATTTTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAG 1983181 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| |||||||| Sbjct 1983182 TCAGGGTCTTCACGAAGATCTGCAT 1983206 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || |||||||| | ||| | | | || || ||||||||||| Sbjct 1982326 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 1982384 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| |||| ||||||||| || |||||||| ||||| || |||||| ||| Sbjct 1982385 AGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCTTGGATCTTGGCCTT 1982444 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || ||||||| || || | ||||| ||| ||||||||||| || Sbjct 1982445 CACATTTTCGATGGTATCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCGGTCAGGGT 1982504 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 1982505 CTTCACGAAGATCTGCATG 1982523 >seq376 Length=1707047 Score = 104 bits (114), Expect = 2e-17 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| ||||||||||| || ||| | | | | || || Sbjct 762729 AAGTGCAGGGTGGACTCTTTCTGAATATTGTAATCTAACAGAGTGTGGCCA-TGTTCTAG 762671 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| |||| || | | || ||||| ||||| ||| |||||| || ||||| ||| Sbjct 762670 CTGTTTGCTGGCAAAGGTCAGACGCTGTTGGTCAGGAAAGATGCCCTCGTTGTCTCGGAT 762611 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | ||||| |||||| |||||| | |||| ||||| ||| |||| Sbjct 762610 -TTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTTGGCCTCGAGGGTGATGGTCTTGC 762552 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| || || || || |||||||| Sbjct 762551 CCATCAGGGTCTTCACAAAGATCTGCAT 762524 >seq1820 Length=90317 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| | |||||||| | ||| | | | || || ||||||||||| Sbjct 66951 GTCGACTCTTTCTGGAGGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 66893 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||||||||| |||||| || || || |||||| ||| Sbjct 66892 GGCAAAGATAAGCCTCTGCTGGTCGGGGCGGATGCACTCTTTATCTTGGATCTTGGCCTT 66833 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | || | ||||| |||| ||||| || | ||||| ||| ||||| ||||| || Sbjct 66832 CACAGTTTCGATTGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGTGT 66773 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 66772 CTTCACGAAAATCTGCAT 66755 >seq9 Length=9398461 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/153 (74%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 133509 TCGAGCTGCTTGCCCGC-GTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 || ||||||||||| | | ||||||||| ||| ||||| | ||| |||| || || || Sbjct 525155 TCCAGCTGCTTGCCTGGTGGAAATGAGCCTCTGTTGGTCAGCGGGGCTGCCCTCTTTATC 525214 Query 133568 GGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGT 133627 |||||| ||| | | || | ||||| |||||||||| || | ||||| ||| Sbjct 525215 TTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 525274 Query 133628 TTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||||| || || ||||| ||||||| Sbjct 525275 CTTGCCGGTCAGGGTCTTCACGAAGCTCTGCAT 525307 >seq63 Length=7304539 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| ||||||| || || ||| | |||||| || | |||||| Sbjct 4206573 GTGGACTCTTTCTGGCTATTGTAGTCTGACACAGTGCGC-TGTCCTCTGGCGGTTTGCCC 4206515 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582 || |||| | ||||||| | | || |||||||| |||||||| ||| ||| || || Sbjct 4206514 GCAAAAATCCGACGCTGCTAGGCAGGCGGGATGCCCTCCTTGTCTTGGAT-TTTGGCTTT 4206456 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || || |||| || | |||| | ||| || | ||||| ||| ||||| | || || Sbjct 4206455 GATCTTCTCAGTGATGCCACTGGGGT-CACCTCAAGGGTGATGGTCTTGCCAGCTAGGGT 4206397 Query 133643 TTTTACGAAAATCTGCA 133659 | || |||||||||| Sbjct 4206396 CTCCACAAAAATCTGCA 4206380 >seq86 Length=5199016 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 |||||||| || || | |||||| ||||||||||||||| |||| ||||| || ||| Sbjct 130216 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTG 130275 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||| | || || | || ||||| ||||||||||| Sbjct 130276 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 130313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483350770454360