Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq136 307 1e-78
seq59 149 7e-31
seq34 138 1e-27
seq291 104 3e-17
>seq136
Length=3786782
Score = 307 bits (340), Expect = 1e-78
Identities = 630/932 (68%), Gaps = 17/932 (2%)
Strand=Plus/Plus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| ||||| | |||| ||| || | |||||||| || || ||| |||
Sbjct 1750610 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGGGGTCAACGTCCG 1750669
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAAT--ATCCAATTAAGATCCCC 162176
||||||||||| || |||| ||| ||| || | | ||||| || | || ||
Sbjct 1750670 TGTCGAACTTGTTGGCAAACAAGTGGTGC-----CTGCGAAGCATCCAGTTCAAGTCACC 1750724
Query 162177 CGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCC 162236
| |||||||||||||||||| |||||||| || || ||||| || || || |||| ||
Sbjct 1750725 GGCTCCGAACACGCACACGGAACGCACGTGGACCCCACTGCAGGGTGGGTAGGGGGCGCC 1750784
Query 162237 ATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTC 162296
| | || || |||||| |||| |||||||| || ||||| | ||| || ||||||||
Sbjct 1750785 CTTGGAAACGTCACCCTCGAAGTACTGCCACTTGACAAACCTCGCGATCGCGTGCATGTC 1750844
Query 162297 GGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAG 162356
|| |||||||||| | | | | || || || || ||| | || | ||||| |
Sbjct 1750845 AGACATGTCGTACTTCTGGCTTAAGGACAGGGAGCCCGGGACATCTGGGATCCTCTGAAT 1750904
Query 162357 AGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCT 162416
||| ||||| || | || || || || || || ||||| | ||||||||||||||
Sbjct 1750905 AGTGGCCCAGAGATACTCATCCGGGCTGTAGGTGTCCTTTGCCCACTCCATGAACTTTTG 1750964
Query 162417 GACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCT 162476
|| ||| || | ||| | ||| ||||| ||| | || | || || || ||
Sbjct 1750965 GATTTTTTCATTCTCTAGCACGTACCCCACGTACTTCCTACTGACCACGAAATAGGCACT 1751024
Query 162477 ACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTAC 162536
|| || |||| |||| | | |||||| || ||||||| || ||||| |
Sbjct 1751025 GCCTGAGAACAGGGGTGTTTCAAGAGGAGGCTGCGCTTTGTCAGTCCCTGTGTTCGTCAG 1751084
Query 162537 CATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTG 162596
| |||| | || ||| | ||| ||||||| | | || ||| | |
Sbjct 1751085 CTTTCCGTTAACAACCTTATAATGCTTTTTCCACCTTTCTTTTTTGTTGGATGGCATCCT 1751144
Query 162597 TTCGGTCTCTAGACTGTTACGACCCCCCAAGGC--CTTCAGCTGACGCACCATCTCTAGA 162654
||||| || || |||| | ||||| || ||| |||| || || || || |
Sbjct 1751145 CTCGGTTTCGAGGTTGTT--GTCCCCCATGAGCGACTTGAGCTTCCGGACAATTTCCAAG 1751202
Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714
|||||||||| ||||| || | ||||| ||||| || | || ||||| | | |
Sbjct 1751203 TTGGTCTTAATAGGAAAATCCATACCGCAAAGATTGATCAAGTACTTCCAGTCCGCCTTC 1751262
Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774
| | ||| || || || | ||||| || |||||||| || ||||||||||| ||||||
Sbjct 1751263 ATCCTGTAGAGGTCTTGCATGCAGTTGAGGTCGGCCTGCACCCGACTCCACGAAGCGTAC 1751322
Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834
|| || ||||||| | | |||| || ||||| || ||| || || | || || |||
Sbjct 1751323 ACCACACTCTCCAGCTGACTGGCCACGAAGACGTTACTGAAGCAGGATGCGATGCCAATC 1751382
Query 162835 AC---GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891
|| ||||| || | | |||| || || || ||||| | |||||| | ||||
Sbjct 1751383 ACCGCGGCCAAAAAGGAGTCC---TCCGACTTTCTGTCCACGTGAATGCAGTAGAAATTC 1751439
Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951
||||| || |||||||||||||| | || || | ||| || || || || || |||||
Sbjct 1751440 TGAGGCGCATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGGACCACC 1751499
Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983
||||| || || ||||| ||||| ||||||||
Sbjct 1751500 ATAGAGTAGGCGATGGGAAACTCTGCCTCCTC 1751531
>seq59
Length=5595854
Score = 149 bits (164), Expect = 7e-31
Identities = 205/287 (71%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
|| |||| || || |||| | || || || || || || |||||||||| || | |
Sbjct 4351738 CAGAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAAGTATGGAAGAGGC 4351797
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|| | |||| ||||| ||||| | |||||| ||||| || || | || || || |||
Sbjct 4351798 ACTTGTAACACCCTTCATCCTCTAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTTGA 4351857
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|| | || | || || || | | |||||| || | |||||||| ||||| || || |
Sbjct 4351858 GTTCCAGCTCGGTGATATTTATCTTGTCCTTATAGGCGGGCTGGACCACAACCCCATGGT 4351917
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
| | |||||| ||| ||||||||| |||| || ||| | |||||||| || || |
Sbjct 4351918 TTTTGCTGAAGGTGATCATGTTTTCCGGGCCAACAGGCTTGACTTTCTGCCATGTCACAA 4351977
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGT 172057
| || ||||| | | |||| |||||||||||||| |||||||||
Sbjct 4351978 TCAAGACTTCCTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGT 4352024
Score = 95.1 bits (104), Expect = 1e-14
Identities = 172/250 (69%), Gaps = 9/250 (4%)
Strand=Plus/Plus
Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562
|||||||| ||| | || ||| |||||| ||| | || | ||| | ||||||||
Sbjct 4349081 ACAGTTTGAGTGACGCTGGTCACATTCCCCAGGTGCAGCACCTGGCAGACCACCTCCT-- 4349138
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
| ||||| ||||| || || ||||| || || || | || || |||||||| |||||
Sbjct 4349139 -TCCCCACCTGACTCTTGGGGTCTTTGACCTGGAGGACACTCGTGACAGATGTGGTCCCA 4349197
Query 171623 TTACGATGTA---GAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679
||| | || | |||| | |||||| || || | | || || | || | |||
Sbjct 4349198 TTAGGGTGGAAGAGAACC---TCAGTACTGTTGTCAGTCACTGACCCAGACACCTCCCAG 4349254
Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAG 171739
| || ||||| ||||| | ||| | ||||||||||| || || | |||||||||
Sbjct 4349255 GAGATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTCAGGTGGTCTTCGAAG 4349314
Query 171740 AACTCATAGT 171749
|| | |||||
Sbjct 4349315 AATTTATAGT 4349324
>seq34
Length=7345761
Score = 138 bits (152), Expect = 1e-27
Identities = 395/593 (67%), Gaps = 17/593 (3%)
Strand=Plus/Minus
Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946
||||||||||||| ||| || | | |||||| || | | || || | | ||
Sbjct 5067795 TCCAGTTAAAGTAACTAAGGTACAACTTATTGTTTTTGTCAACTTCTTTCAGATACTTGG 5067736
Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006
| || || | || || | || || | ||| |||||||| | ||| | || | ||||
Sbjct 5067735 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 5067676
Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066
| || ||||| || || |||| || || || | ||||| | || || | || ||
Sbjct 5067675 TCTCATAATTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCTAGAAAAGCAT 5067616
Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126
||||| ||||| || || || || |||| | ||||| ||||| | ||||||||||
Sbjct 5067615 TATAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAAAGATAGAATT 5067556
Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184
| || | ||||| ||| || || || | | ||| | || ||||| | | | |
Sbjct 5067555 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACGTACTCTCCAAATGCTTG 5067498
Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243
||| || ||| || || ||| ||| || ||||| ||| || || || || |||
Sbjct 5067497 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTTGCGT 5067439
Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302
| || |||||| || || || |||||||| |||||||| |||||||| || ||
Sbjct 5067438 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-CTCTTTGCTTGGCAC---- 5067384
Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360
||| | || || | || | | || | ||| | | || || ||||| || ||||| |
Sbjct 5067383 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCGTAAGGCACTTGGATATCTG 5067325
Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGGG 177419
|||| || | ||| || | ||| | ||||| |||| || ||||| | ||| ||| |
Sbjct 5067324 AGTCACGGCGGTAAGTCAGCGTCAAGTTGAACAGGTGCTCAATACCACTCTTTTGAGGCG 5067265
Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCT 177472
||| | | || ||||| || |||||||| ||||| || || |||| ||| ||
Sbjct 5067264 -TGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCT 5067213
>seq291
Length=2225859
Score = 104 bits (114), Expect = 3e-17
Identities = 228/336 (68%), Gaps = 8/336 (2%)
Strand=Plus/Minus
Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702
|||||||| ||||||||| | |||||||| || || || ||| | | ||||||
Sbjct 1771496 ACCATCTCAGCATTGGTCTTTATAGGAAAGTCTGTCCCACACGTATTCAGTAGGTATTTC 1771437
Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760
|| || ||| || | | || |||| | ||| ||||| || ||||| || |
Sbjct 1771436 CAGGGCACC--GAGCTCTGGAGCAAGTCCTCCATACAATTCAGGTCAGCCTGCACCCTGG 1771379
Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820
||| || || || || || | ||||| || |||| | |||||||| ||| || |
Sbjct 1771378 ACCAGGAGGCATAAACCACCCGAACCAACTTACTGGCTATGAAGACATTTGGGAAGCATG 1771319
Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878
| || ||| || | || ||| | ||| | | || | |||| ||| || || ||
Sbjct 1771318 ACACAATCGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GATTTCTCATCCACATGGAC 1771261
Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938
||||| | ||||||||||| || | || | ||| | ||| ||||| ||||||||||
Sbjct 1771260 ACAGTACACGTTCTGAGGGGCATACAAAGCGCGCAGCAGTCTTTCGAAGTTCTCTATCTT 1771201
Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974
|| || ||||| ||||| || || |||||||| ||
Sbjct 1771200 ATCATGGACCACCATAGAGTATGCAATGGGGAAGTC 1771165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578348206894400
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