Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq136 307 1e-78 seq59 149 7e-31 seq34 138 1e-27 seq291 104 3e-17 >seq136 Length=3786782 Score = 307 bits (340), Expect = 1e-78 Identities = 630/932 (68%), Gaps = 17/932 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || ||| ||| Sbjct 1750610 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGGGGTCAACGTCCG 1750669 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAAT--ATCCAATTAAGATCCCC 162176 ||||||||||| || |||| ||| ||| || | | ||||| || | || || Sbjct 1750670 TGTCGAACTTGTTGGCAAACAAGTGGTGC-----CTGCGAAGCATCCAGTTCAAGTCACC 1750724 Query 162177 CGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCC 162236 | |||||||||||||||||| |||||||| || || ||||| || || || |||| || Sbjct 1750725 GGCTCCGAACACGCACACGGAACGCACGTGGACCCCACTGCAGGGTGGGTAGGGGGCGCC 1750784 Query 162237 ATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTC 162296 | | || || |||||| |||| |||||||| || ||||| | ||| || |||||||| Sbjct 1750785 CTTGGAAACGTCACCCTCGAAGTACTGCCACTTGACAAACCTCGCGATCGCGTGCATGTC 1750844 Query 162297 GGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAG 162356 || |||||||||| | | | | || || || || ||| | || | ||||| | Sbjct 1750845 AGACATGTCGTACTTCTGGCTTAAGGACAGGGAGCCCGGGACATCTGGGATCCTCTGAAT 1750904 Query 162357 AGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCT 162416 ||| ||||| || | || || || || || || ||||| | |||||||||||||| Sbjct 1750905 AGTGGCCCAGAGATACTCATCCGGGCTGTAGGTGTCCTTTGCCCACTCCATGAACTTTTG 1750964 Query 162417 GACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCT 162476 || ||| || | ||| | ||| ||||| ||| | || | || || || || Sbjct 1750965 GATTTTTTCATTCTCTAGCACGTACCCCACGTACTTCCTACTGACCACGAAATAGGCACT 1751024 Query 162477 ACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTAC 162536 || || |||| |||| | | |||||| || ||||||| || ||||| | Sbjct 1751025 GCCTGAGAACAGGGGTGTTTCAAGAGGAGGCTGCGCTTTGTCAGTCCCTGTGTTCGTCAG 1751084 Query 162537 CATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTG 162596 | |||| | || ||| | ||| ||||||| | | || ||| | | Sbjct 1751085 CTTTCCGTTAACAACCTTATAATGCTTTTTCCACCTTTCTTTTTTGTTGGATGGCATCCT 1751144 Query 162597 TTCGGTCTCTAGACTGTTACGACCCCCCAAGGC--CTTCAGCTGACGCACCATCTCTAGA 162654 ||||| || || |||| | ||||| || ||| |||| || || || || | Sbjct 1751145 CTCGGTTTCGAGGTTGTT--GTCCCCCATGAGCGACTTGAGCTTCCGGACAATTTCCAAG 1751202 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 |||||||||| ||||| || | ||||| ||||| || | || ||||| | | | Sbjct 1751203 TTGGTCTTAATAGGAAAATCCATACCGCAAAGATTGATCAAGTACTTCCAGTCCGCCTTC 1751262 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | | ||| || || || | ||||| || |||||||| || ||||||||||| |||||| Sbjct 1751263 ATCCTGTAGAGGTCTTGCATGCAGTTGAGGTCGGCCTGCACCCGACTCCACGAAGCGTAC 1751322 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || ||||||| | | |||| || ||||| || ||| || || | || || ||| Sbjct 1751323 ACCACACTCTCCAGCTGACTGGCCACGAAGACGTTACTGAAGCAGGATGCGATGCCAATC 1751382 Query 162835 AC---GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 || ||||| || | | |||| || || || ||||| | |||||| | |||| Sbjct 1751383 ACCGCGGCCAAAAAGGAGTCC---TCCGACTTTCTGTCCACGTGAATGCAGTAGAAATTC 1751439 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| || |||||||||||||| | || || | ||| || || || || || ||||| Sbjct 1751440 TGAGGCGCATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGGACCACC 1751499 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||||| || || ||||| ||||| |||||||| Sbjct 1751500 ATAGAGTAGGCGATGGGAAACTCTGCCTCCTC 1751531 >seq59 Length=5595854 Score = 149 bits (164), Expect = 7e-31 Identities = 205/287 (71%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || || || || |||||||||| || | | Sbjct 4351738 CAGAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAAGTATGGAAGAGGC 4351797 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| ||||| ||||| | |||||| ||||| || || | || || || ||| Sbjct 4351798 ACTTGTAACACCCTTCATCCTCTAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTTGA 4351857 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 || | || | || || || | | |||||| || | |||||||| ||||| || || | Sbjct 4351858 GTTCCAGCTCGGTGATATTTATCTTGTCCTTATAGGCGGGCTGGACCACAACCCCATGGT 4351917 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 | | |||||| ||| ||||||||| |||| || ||| | |||||||| || || | Sbjct 4351918 TTTTGCTGAAGGTGATCATGTTTTCCGGGCCAACAGGCTTGACTTTCTGCCATGTCACAA 4351977 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGT 172057 | || ||||| | | |||| |||||||||||||| ||||||||| Sbjct 4351978 TCAAGACTTCCTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGT 4352024 Score = 95.1 bits (104), Expect = 1e-14 Identities = 172/250 (69%), Gaps = 9/250 (4%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| ||| | || ||| |||||| ||| | || | ||| | |||||||| Sbjct 4349081 ACAGTTTGAGTGACGCTGGTCACATTCCCCAGGTGCAGCACCTGGCAGACCACCTCCT-- 4349138 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||||| || || ||||| || || || | || || |||||||| ||||| Sbjct 4349139 -TCCCCACCTGACTCTTGGGGTCTTTGACCTGGAGGACACTCGTGACAGATGTGGTCCCA 4349197 Query 171623 TTACGATGTA---GAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 ||| | || | |||| | |||||| || || | | || || | || | ||| Sbjct 4349198 TTAGGGTGGAAGAGAACC---TCAGTACTGTTGTCAGTCACTGACCCAGACACCTCCCAG 4349254 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAG 171739 | || ||||| ||||| | ||| | ||||||||||| || || | ||||||||| Sbjct 4349255 GAGATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTCAGGTGGTCTTCGAAG 4349314 Query 171740 AACTCATAGT 171749 || | ||||| Sbjct 4349315 AATTTATAGT 4349324 >seq34 Length=7345761 Score = 138 bits (152), Expect = 1e-27 Identities = 395/593 (67%), Gaps = 17/593 (3%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| || | | || || | | || Sbjct 5067795 TCCAGTTAAAGTAACTAAGGTACAACTTATTGTTTTTGTCAACTTCTTTCAGATACTTGG 5067736 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 5067735 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 5067676 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || ||||| || || |||| || || || | ||||| | || || | || || Sbjct 5067675 TCTCATAATTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCTAGAAAAGCAT 5067616 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 ||||| ||||| || || || || |||| | ||||| ||||| | |||||||||| Sbjct 5067615 TATAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAAAGATAGAATT 5067556 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | || ||||| | | | | Sbjct 5067555 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACGTACTCTCCAAATGCTTG 5067498 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || || ||| Sbjct 5067497 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTTGCGT 5067439 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| |||||||| |||||||| || || Sbjct 5067438 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-CTCTTTGCTTGGCAC---- 5067384 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || || | || | | || | ||| | | || || ||||| || ||||| | Sbjct 5067383 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCGTAAGGCACTTGGATATCTG 5067325 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGGG 177419 |||| || | ||| || | ||| | ||||| |||| || ||||| | ||| ||| | Sbjct 5067324 AGTCACGGCGGTAAGTCAGCGTCAAGTTGAACAGGTGCTCAATACCACTCTTTTGAGGCG 5067265 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCT 177472 ||| | | || ||||| || |||||||| ||||| || || |||| ||| || Sbjct 5067264 -TGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCT 5067213 >seq291 Length=2225859 Score = 104 bits (114), Expect = 3e-17 Identities = 228/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | |||||||| || || || ||| | | |||||| Sbjct 1771496 ACCATCTCAGCATTGGTCTTTATAGGAAAGTCTGTCCCACACGTATTCAGTAGGTATTTC 1771437 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || || ||| || | | || |||| | ||| ||||| || ||||| || | Sbjct 1771436 CAGGGCACC--GAGCTCTGGAGCAAGTCCTCCATACAATTCAGGTCAGCCTGCACCCTGG 1771379 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || | ||||| || |||| | |||||||| ||| || | Sbjct 1771378 ACCAGGAGGCATAAACCACCCGAACCAACTTACTGGCTATGAAGACATTTGGGAAGCATG 1771319 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 | || ||| || | || ||| | ||| | | || | |||| ||| || || || Sbjct 1771318 ACACAATCGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GATTTCTCATCCACATGGAC 1771261 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 ||||| | ||||||||||| || | || | ||| | ||| ||||| |||||||||| Sbjct 1771260 ACAGTACACGTTCTGAGGGGCATACAAAGCGCGCAGCAGTCTTTCGAAGTTCTCTATCTT 1771201 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 || || ||||| ||||| || || |||||||| || Sbjct 1771200 ATCATGGACCACCATAGAGTATGCAATGGGGAAGTC 1771165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578348206894400