Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq695 125 2e-23 seq694 123 6e-23 seq517 123 6e-23 seq1820 120 7e-22 seq26 118 3e-21 seq101 102 2e-16 >seq695 Length=815165 Score = 125 bits (138), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 206173 CAGATATT--TTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTG 206230 ||||| || ||| ||||| || || || || || |||||| | || || ||| || | Sbjct 16686 CAGATTTTCGTTG-AAAACCCTAACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCGG 16744 Query 206231 ACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290 | ||| | ||| |||||| |||||||| || || ||||||||| || || | Sbjct 16745 ATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGC 16804 Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350 | ||||| ||||| || || |||| ||||||||||| | |||||| | || |||||| Sbjct 16805 AGAGACTGATCTTTGCTGGCAAGCCACTGGAAGATGGACGTACTTTGTCTGACTACAACA 16864 Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 | || || ||||| |||||||| ||||| |||||||| || Sbjct 16865 TTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTCCG 16904 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || |||||||| ||||| |||||||| ||||| || || | || ||||||| |||||| Sbjct 16904 CGGAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 16845 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | |||||||||||| |||| || || ||||| || Sbjct 16844 CGTCCATCTTCCAGTGGCTTGCCAGCAAAGATCAG 16810 >seq694 Length=814564 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| | || || ||| || || ||| | ||| Sbjct 212364 AAAACCCTAACGGGGAAGACCATCACTCTTGAGGTTGAACCCTCGGATACAATAGAAAAT 212305 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||||||| || || ||||||||| || || || ||||| ||||| Sbjct 212304 GTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTAATCTTT 212245 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||||| | || || |||| Sbjct 212244 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGTAGTCC 212185 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| |||||||| || Sbjct 212184 ACTCTTCATCTTGTGTTGAGACTCCG 212159 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || |||||||| ||||| |||||||| |||| || || | || ||||||| |||||| Sbjct 212159 CGGAGTCTCAACACAAGATGAAGAGTGGACTACTTTTGAATGTTGTAGTCAGACAAAGTA 212218 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | |||||||||||| ||||| || || ||||| || Sbjct 212219 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATTAG 212253 >seq517 Length=1171097 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| | || || ||| || || ||| | ||| Sbjct 1142429 AAAACCCTAACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCGGATACAATAGAAAAT 1142488 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||||||| || || ||||||||| || || || ||||| ||||| Sbjct 1142489 GTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTT 1142548 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | | |||||| | || || ||||| Sbjct 1142549 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTAACTACAACTTTCAAAAGGAGTCC 1142608 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| |||||||| || Sbjct 1142609 ACTCTTCATCTTGTGTTGAGACTCCG 1142634 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || |||||||| ||||| |||||||| ||||| || || | || |||| || |||||| Sbjct 1142634 CGGAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAAAGTTGTAGTTAGACAAAGTA 1142575 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | |||||||||||| ||||| || || ||||| || Sbjct 1142574 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAG 1142540 >seq1820 Length=90317 Score = 120 bits (132), Expect = 7e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| |||||| ||||||| ||||| | Sbjct 66770 AAGACACTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAGTGACACAATCGAAACT 66829 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| ||||| | || || ||| || || |||||||| Sbjct 66830 GTGAAGGCCAAGATCCAAGATAAAGAGTGCATCCGCCCCGACCAGCAGAGGCTTATCTTT 66889 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 66890 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACCTCCAGAAAGAGTCG 66949 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 66950 ACTCTCCACCTGGT 66963 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| ||||| ||||||||||||| || || |||| | ||| | ||||||||| Sbjct 66963 ACCAGGTGGAGAGTCGACTCTTTCTGGAGGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 66904 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| ||||| |||||||||| Sbjct 66903 AGCTGCTTGCCGGCAAAGATAAGCC 66879 >seq26 Length=7528108 Score = 118 bits (130), Expect = 3e-21 Identities = 159/221 (72%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| ||||| || || || || || |||||| | | || ||| || || Sbjct 6810589 CAGATATTCATGAAAACCCTAACGGGGAAGACCATCACTCTCAAGGTTGAACCCTCGGAT 6810648 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| |||||| |||||||| || || ||||||||| || || || Sbjct 6810649 ACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCCGATCAGCAG 6810708 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGA---AGGACTTTGGCCGATTACAAC 206349 || || ||||| || || ||||| ||||||||||| | |||||| | || |||||| Sbjct 6810709 AGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTACTTTGTCTGACTACAAC 6810768 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 | || || ||||| |||||||| ||||| ||||||||||| Sbjct 6810769 ATTCAAAAGGAGTCCACTCTTCAGCTTGTGTTGAGACTTCG 6810809 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/108 (79%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAA---A 204808 ||||||||||| ||||| |||||||| ||||| || || | || ||||||| ||| | Sbjct 6810809 CGAAGTCTCAACACAAGCTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 6810750 Query 204809 GTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || | |||||||||||| ||||| || || ||||| |||| || ||| Sbjct 6810749 GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGA 6810702 >seq101 Length=4626942 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| ||||||||||| |||||| ||||| Sbjct 1982735 AAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGTGACACCATCGAAAAT 1982676 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || || ||||| || Sbjct 1982675 GTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTTATTTTT 1982616 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 1982615 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCC 1982556 Query 206365 ACTCTTCACCTTGT 206378 ||||| || || || Sbjct 1982555 ACTCTGCATCTGGT 1982542 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| |||||| |||||| ||||| Sbjct 1983191 AAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAGTGACACCATCGAAAAT 1983132 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || || || || ||| || || ||||| || Sbjct 1983131 GTGAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTTATTTTT 1983072 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 1983071 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCC 1983012 Query 206365 ACTCTTCACCTTGT 206378 || || || || || Sbjct 1983011 ACCCTGCATCTGGT 1982998 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | ||||| || ||| || ||||| Sbjct 1982507 AAGACCCTGACCGGCAAGACCATCACCCTAGAAGTAGAGCCCAGTGATACCATCGAAAAT 1982448 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || || || || ||| || || ||||| || Sbjct 1982447 GTGAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTTATTTTT 1982388 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 1982387 GCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 1982328 Query 206365 ACTCTTCACCTTGTT 206379 ||||| ||||| ||| Sbjct 1982327 ACTCTCCACCTGGTT 1982313 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || || || ||||||||||| ||||| ||||| Sbjct 1982963 AAGACCCTGACCGGCAAGACCATAACCCTGGAAGTGGAACCCAGCGACACCATCGAAAAT 1982904 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || || ||||| || Sbjct 1982903 GTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTTATTTTT 1982844 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| |||| |||||||| Sbjct 1982843 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAAAAAGAGTCC 1982784 Query 206365 ACTCTTCACCTTGT 206378 || || || || || Sbjct 1982783 ACCCTGCATCTGGT 1982770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181645318446469