Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq86 91.5 1e-13 seq694 89.7 5e-13 seq101 86.0 6e-12 seq517 84.2 2e-11 seq695 82.4 7e-11 >seq86 Length=5199016 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| || ||||| | |||||||||||||||||| || ||||| || ||||| ||| Sbjct 130216 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTG 130275 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 || |||||||| || | |||||| ||||||||||||| Sbjct 130276 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 130313 >seq694 Length=814564 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||| ||||||||||||||||| || ||||| |||||| || || || || | | Sbjct 212186 GACTACTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 212245 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 ||||||| | ||| ||||| ||||| || ||||| ||||| ||| || || | Sbjct 212246 AAGATTAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACA 212305 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || || | || | || || || || || ||||| Sbjct 212306 TTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTCTTCCCCGTTAGGGTTTTC 212365 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 212366 ACGAAAATCTGCAT 212379 >seq101 Length=4626942 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| ||| | | | ||||||||||| |||||||| || | || || Sbjct 1982760 CAGGCGCAGGACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAATCAGAAAGAGTGCG 1982819 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| | | || || | ||| || || || || ||||| || Sbjct 1982820 GCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTC 1982879 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||||| || || |||| | ||| | || ||| | || |||||||| | || Sbjct 1982880 CTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCGCTGGGTTCCACTTCCAGGGT 1982939 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || || ||||| || || | ||| ||||||||| Sbjct 1982940 TATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 1982979 >seq517 Length=1171097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||| |||||||| || ||||| |||||| || || || || | | Sbjct 1142607 GACTCCTTTTGAAAGTTGTAGTTAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 1142548 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| ||||| || ||||| ||||| ||| || || | Sbjct 1142547 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACA 1142488 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || |||| || | || || || || || ||||| Sbjct 1142487 TTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTC 1142428 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 1142427 ACGAAAATCTGCAT 1142414 >seq695 Length=815165 Score = 82.4 bits (90), Expect = 7e-11 Identities = 136/195 (70%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||||| |||||| || | || || | | Sbjct 16877 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTGGCTTGCCAGCA 16818 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| ||||| || ||||| ||||| ||| || || | Sbjct 16817 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACA 16758 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT- 132108 | ||| | ||||| | || || || |||| || | || || || || || ||||| Sbjct 16757 TTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTC 16698 Query 132109 TATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 16697 AACGAAAATCTGCAT 16683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476542156910040