Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq59 266 4e-66
seq185 176 5e-39
seq43 159 4e-34
seq8 123 3e-23
seq354 82.4 9e-11
>seq59
Length=5595854
Score = 266 bits (294), Expect = 4e-66
Identities = 251/320 (78%), Gaps = 0/320 (0%)
Strand=Plus/Minus
Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131
||||||||||| |||| | ||||||||| || || ||| | | |||||| |||
Sbjct 4352059 GTGGTGACCCAAAATGAAAAAAAGCTGCTGAATGGACCTGCTTCCTTAAGATGCTCTCTG 4352000
Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191
|| | ||| |||| || ||||||| || ||||||||| ||||||| || ||
Sbjct 4351999 CAAAATTCCGAGGAAGTCTTGATTGTGACATGGCAGAAAGTCAAGCCTGTTGGCCCGGAA 4351940
Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251
|||||||| || || |||||| |||| ||||| ||||||||||| || ||||||||||||
Sbjct 4351939 AACATGATCACCTTCAGCAAAAACCATGGGGTTGTGGTCCAGCCCGCCTATAAGGACAAG 4351880
Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311
||||| |||||| |||| | |||| | ||||||||||| || || |||||||||||| ||
Sbjct 4351879 ATAAATATCACCGAGCTGGAACTCAAGAACTCAACCATTACCTTCTGGAATACCACCCTA 4351820
Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371
||||| || ||||| ||||| |||||||| | || ||||| |||||||| ||||| ||
Sbjct 4351819 GAGGATGAAGGGTGTTACAAGTGCCTCTTCCATACTTTTGGTTCTGGGAAGATCTCAGGA 4351760
Query 171372 GTGGCCTGCCTCACCCTCTC 171391
|||||||||||||||||
Sbjct 4351759 ACAGCCTGCCTCACCCTCTC 4351740
Score = 219 bits (242), Expect = 5e-52
Identities = 211/271 (78%), Gaps = 0/271 (0%)
Strand=Plus/Minus
Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447
|| | || |||||||| ||||| || | |||||||| || || ||||||||||| ||||
Sbjct 4349351 TCCCAGTACAGCCCACAGTGTTCCTTTACTATAAATTCTTCGAAGACCACCTGAATATCA 4349292
Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507
| || ||||||||||||||||| | ||| ||| | ||| || | || ||||||| |
Sbjct 4349291 CTTGCTCTGCCAATGCCCGCCCAGCCCCTGTGATCTCCTGGGAGGTGTCTGGGTCAGTGA 4349232
Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567
||| ||||||| |||||||| | ||| ||||||| || || ||||| || ||||| |
Sbjct 4349231 CTGACAACAGTACTGAGGTTCTCTTCCACCCTAATGGGACCACATCTGTCACGAGTGTCC 4349172
Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627
|||| || |||||||||||||||||| |||| |||||||| ||||||| ||| |||||
Sbjct 4349171 TCCAGGTCAAAGACCCCAAGAGTCAGGTGGGGAAGGAGGTGGTCTGCCAGGTGCTGCACC 4349112
Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGT 171658
|||| ||||| || | | | | |||||||
Sbjct 4349111 TGGGGAATGTGACCAGCGTCACTCAAACTGT 4349081
>seq185
Length=3693041
Score = 176 bits (194), Expect = 5e-39
Identities = 138/165 (84%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041
||| ||||| || | ||| || | ||||||||||||||| | ||||||||| ||||||||
Sbjct 3389795 CTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 3389736
Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101
||| || |||||||||||||||||||||||||||||||||||||| || ||||| || |
Sbjct 3389735 GGGCACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCATT 3389676
Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146
||||||| |||||||| ||| |||||||| || || |||||
Sbjct 3389675 CACCACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCAT 3389631
>seq43
Length=9688235
Score = 159 bits (176), Expect = 4e-34
Identities = 134/167 (80%), Gaps = 12/167 (7%)
Strand=Plus/Minus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||||| |||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 9130265 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACTTGGAGGAGGTGA 9130206
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| ||||| ||||| ||| | ||| || | ||||| || || ||||
Sbjct 9130205 TGCCCCAGGCTGAGAACCAC------------GACCCAGAAGTCAAGGAACACGTGAACT 9130158
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
| |||||||||||||| |||||||| || ||||||||||||| |||
Sbjct 9130157 CGCTGGGGGAAAAGCTGAAGACCCTCAGGCTGAGGCTGCGGCGCTGT 9130111
Score = 87.8 bits (96), Expect = 2e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521
|||| ||||| | ||||| |||||||| |||||||||||||| || || || |||||||
Sbjct 9127988 AGCTCCAAGAGAGAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 9127929
Query 178522 TAGAAGCTTACATGACAA 178539
||||| | ||||||||||
Sbjct 9127928 TAGAAACGTACATGACAA 9127911
Score = 84.2 bits (92), Expect = 3e-11
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232
|||||||||||| ||||||||||||| ||||| | ||||||| ||||||| |||||||||
Sbjct 9130599 CAAATGAAGGACAAGCTGGACAACATATTGTTGACTGGGTCCTTGCTGGAGGACTTTAAG 9130540
Query 178233 G 178233
|
Sbjct 9130539 G 9130539
>seq8
Length=10166724
Score = 123 bits (136), Expect = 3e-23
Identities = 213/307 (69%), Gaps = 12/307 (4%)
Strand=Plus/Plus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| |||||||| | |||| || | ||||| ||||||| |||| |||||| |
Sbjct 6334144 GTACTCCCTGGTGTTCATCATTGGCCTGGTCGGCAACATCCTGGTGCTCCTGGTCCTCTT 6334203
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
||||||||||||||| || |||||||| ||||| ||| ||||||||||| || ||
Sbjct 6334204 GCAGTACAAGAGGCTCAAGAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCAGA 6334263
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACTGGTG 8788
|||||| | | ||||| || ||||| ||||| ||| | | || || ||||| |
Sbjct 6334264 CCTGCTCTTCCTCTTCACTCTGCCCTTCTGGATCGACTACAAGCTGAAGGATGACTGGAG 6334323
Query 8789 GGT--GGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACT 8846
| | || | | ||| |||||||| | ||| |||| || || |
Sbjct 6334324 TTTCAGTGATGGC-ACC--------TGTAAGTTGCTCTCGGGGCTTTATTACACGGGCTT 6334374
Query 8847 GTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTA 8906
|||||| || || | || ||||||||| |||| | |||||||| || || |||| |
Sbjct 6334375 GTACAGTGAGATCTTTTTCATCATCCTGCTGACCATCGACAGGTACCTGGCCATTGTCCA 6334434
Query 8907 CGCGGTG 8913
||| |||
Sbjct 6334435 CGCCGTG 6334441
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
||| || |||||||| || |||| || | ||||| || ||||| | | ||||||
Sbjct 6290425 GTATTCCCTGGTGTTCGTGGTTGGTCTCCTGGGCAACGCGATGGTGGTGGTCATCCTCAC 6290366
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
|| |||||||||||| ||| ||||||||||| |||||| |||| ||||| || |||
Sbjct 6290365 GAAATACAAGAGGCTCTGGACTATGACCAACATATTCCTGCTCAATTTGGCCATTTCTGA 6290306
Query 8730 CCTGCT 8735
| ||||
Sbjct 6290305 CTTGCT 6290300
>seq354
Length=1792354
Score = 82.4 bits (90), Expect = 9e-11
Identities = 159/230 (69%), Gaps = 5/230 (2%)
Strand=Plus/Plus
Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGT-TC-CTGGCCAGCTGAATTTTCAGGGGCTCCA 146929
|| |||||||| ||||| || | || | || ||| ||||| |||||||| | ||
Sbjct 161421 ATTTTGAGCTTCGGGAAAGGCCTTGGTTCTCACTGA--AGCTGCATTTTCAGAGTTTCAG 161478
Query 146930 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGC 146989
||| || ||||| | || || | || | || | ||||| || ||||| | ||
Sbjct 161479 TGTGATTCAGGTAAATATGTATATCTTCAAGA-TATGTATGAAGTCACCTGGCTTCACGC 161537
Query 146990 CGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCC 147049
| || | ||| || | || |||| ||||| | || | || | ||||||||| ||
Sbjct 161538 CTGTGATGTGTGCAATCAGGTAGATGAGCCAGGTGTGGAGAGCCAAGTTGAAGGGCACAG 161597
Query 147050 CCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG 147099
||| |||||||| || | |||| ||||||||||||| || ||||| |||
Sbjct 161598 CCAAACCCATGTCTCCTGCCCTCCGGTACAGCTGGCAGGACAGCTCACCG 161647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583403474469600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |