Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq59 266 4e-66 seq185 176 5e-39 seq43 159 4e-34 seq8 123 3e-23 seq354 82.4 9e-11 >seq59 Length=5595854 Score = 266 bits (294), Expect = 4e-66 Identities = 251/320 (78%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||| |||| | ||||||||| || || ||| | | |||||| ||| Sbjct 4352059 GTGGTGACCCAAAATGAAAAAAAGCTGCTGAATGGACCTGCTTCCTTAAGATGCTCTCTG 4352000 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | ||| |||| || ||||||| || ||||||||| ||||||| || || Sbjct 4351999 CAAAATTCCGAGGAAGTCTTGATTGTGACATGGCAGAAAGTCAAGCCTGTTGGCCCGGAA 4351940 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || || |||||| |||| ||||| ||||||||||| || |||||||||||| Sbjct 4351939 AACATGATCACCTTCAGCAAAAACCATGGGGTTGTGGTCCAGCCCGCCTATAAGGACAAG 4351880 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||| |||||| |||| | |||| | ||||||||||| || || |||||||||||| || Sbjct 4351879 ATAAATATCACCGAGCTGGAACTCAAGAACTCAACCATTACCTTCTGGAATACCACCCTA 4351820 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| || ||||| ||||| |||||||| | || ||||| |||||||| ||||| || Sbjct 4351819 GAGGATGAAGGGTGTTACAAGTGCCTCTTCCATACTTTTGGTTCTGGGAAGATCTCAGGA 4351760 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 ||||||||||||||||| Sbjct 4351759 ACAGCCTGCCTCACCCTCTC 4351740 Score = 219 bits (242), Expect = 5e-52 Identities = 211/271 (78%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| ||||| || | |||||||| || || ||||||||||| |||| Sbjct 4349351 TCCCAGTACAGCCCACAGTGTTCCTTTACTATAAATTCTTCGAAGACCACCTGAATATCA 4349292 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || ||||||||||||||||| | ||| ||| | ||| || | || ||||||| | Sbjct 4349291 CTTGCTCTGCCAATGCCCGCCCAGCCCCTGTGATCTCCTGGGAGGTGTCTGGGTCAGTGA 4349232 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 ||| ||||||| |||||||| | ||| ||||||| || || ||||| || ||||| | Sbjct 4349231 CTGACAACAGTACTGAGGTTCTCTTCCACCCTAATGGGACCACATCTGTCACGAGTGTCC 4349172 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| || |||||||||||||||||| |||| |||||||| ||||||| ||| ||||| Sbjct 4349171 TCCAGGTCAAAGACCCCAAGAGTCAGGTGGGGAAGGAGGTGGTCTGCCAGGTGCTGCACC 4349112 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGT 171658 |||| ||||| || | | | | ||||||| Sbjct 4349111 TGGGGAATGTGACCAGCGTCACTCAAACTGT 4349081 >seq185 Length=3693041 Score = 176 bits (194), Expect = 5e-39 Identities = 138/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 3389795 CTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 3389736 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||||||||||||||||||||||||||| || ||||| || | Sbjct 3389735 GGGCACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCATT 3389676 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| ||| |||||||| || || ||||| Sbjct 3389675 CACCACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCAT 3389631 >seq43 Length=9688235 Score = 159 bits (176), Expect = 4e-34 Identities = 134/167 (80%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct 9130265 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACTTGGAGGAGGTGA 9130206 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| | ||| || | ||||| || || |||| Sbjct 9130205 TGCCCCAGGCTGAGAACCAC------------GACCCAGAAGTCAAGGAACACGTGAACT 9130158 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| |||||||| || ||||||||||||| ||| Sbjct 9130157 CGCTGGGGGAAAAGCTGAAGACCCTCAGGCTGAGGCTGCGGCGCTGT 9130111 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | ||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 9127988 AGCTCCAAGAGAGAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 9127929 Query 178522 TAGAAGCTTACATGACAA 178539 ||||| | |||||||||| Sbjct 9127928 TAGAAACGTACATGACAA 9127911 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 |||||||||||| ||||||||||||| ||||| | ||||||| ||||||| ||||||||| Sbjct 9130599 CAAATGAAGGACAAGCTGGACAACATATTGTTGACTGGGTCCTTGCTGGAGGACTTTAAG 9130540 Query 178233 G 178233 | Sbjct 9130539 G 9130539 >seq8 Length=10166724 Score = 123 bits (136), Expect = 3e-23 Identities = 213/307 (69%), Gaps = 12/307 (4%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || | ||||| ||||||| |||| |||||| | Sbjct 6334144 GTACTCCCTGGTGTTCATCATTGGCCTGGTCGGCAACATCCTGGTGCTCCTGGTCCTCTT 6334203 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||||||||||||||| || |||||||| ||||| ||| ||||||||||| || || Sbjct 6334204 GCAGTACAAGAGGCTCAAGAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCAGA 6334263 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACTGGTG 8788 |||||| | | ||||| || ||||| ||||| ||| | | || || ||||| | Sbjct 6334264 CCTGCTCTTCCTCTTCACTCTGCCCTTCTGGATCGACTACAAGCTGAAGGATGACTGGAG 6334323 Query 8789 GGT--GGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACT 8846 | | || | | ||| |||||||| | ||| |||| || || | Sbjct 6334324 TTTCAGTGATGGC-ACC--------TGTAAGTTGCTCTCGGGGCTTTATTACACGGGCTT 6334374 Query 8847 GTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTA 8906 |||||| || || | || ||||||||| |||| | |||||||| || || |||| | Sbjct 6334375 GTACAGTGAGATCTTTTTCATCATCCTGCTGACCATCGACAGGTACCTGGCCATTGTCCA 6334434 Query 8907 CGCGGTG 8913 ||| ||| Sbjct 6334435 CGCCGTG 6334441 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| || |||| || | ||||| || ||||| | | |||||| Sbjct 6290425 GTATTCCCTGGTGTTCGTGGTTGGTCTCCTGGGCAACGCGATGGTGGTGGTCATCCTCAC 6290366 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || |||||||||||| ||| ||||||||||| |||||| |||| ||||| || ||| Sbjct 6290365 GAAATACAAGAGGCTCTGGACTATGACCAACATATTCCTGCTCAATTTGGCCATTTCTGA 6290306 Query 8730 CCTGCT 8735 | |||| Sbjct 6290305 CTTGCT 6290300 >seq354 Length=1792354 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/230 (69%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGT-TC-CTGGCCAGCTGAATTTTCAGGGGCTCCA 146929 || |||||||| ||||| || | || | || ||| ||||| |||||||| | || Sbjct 161421 ATTTTGAGCTTCGGGAAAGGCCTTGGTTCTCACTGA--AGCTGCATTTTCAGAGTTTCAG 161478 Query 146930 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGC 146989 ||| || ||||| | || || | || | || | ||||| || ||||| | || Sbjct 161479 TGTGATTCAGGTAAATATGTATATCTTCAAGA-TATGTATGAAGTCACCTGGCTTCACGC 161537 Query 146990 CGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCC 147049 | || | ||| || | || |||| ||||| | || | || | ||||||||| || Sbjct 161538 CTGTGATGTGTGCAATCAGGTAGATGAGCCAGGTGTGGAGAGCCAAGTTGAAGGGCACAG 161597 Query 147050 CCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG 147099 ||| |||||||| || | |||| ||||||||||||| || ||||| ||| Sbjct 161598 CCAAACCCATGTCTCCTGCCCTCCGGTACAGCTGGCAGGACAGCTCACCG 161647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583403474469600