Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq101 116 3e-21 seq1820 105 6e-18 seq694 105 6e-18 seq517 105 6e-18 seq292 105 6e-18 seq695 104 2e-17 seq26 100 3e-16 seq108 95.1 1e-14 >seq101 Length=4626942 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| ||||| ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 1982787 CTCTTTTTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 1982846 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || |||||| ||| |||||| ||||| | | Sbjct 1982847 AATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATT 1982906 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||||| | |||||| |||| || || || || || |||| || ||||| Sbjct 1982907 TTCGATGGTGTCGCTGGGTTCCACTTCCAGGGTTATGGTCTTGCCGGTCAGGGTCTTCAC 1982966 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1982967 GAAGATCTGCAT 1982978 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 1983015 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 1983074 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || |||||| || |||||| ||||| | | Sbjct 1983075 AATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCTTGGATCTTGGCCTTCACATT 1983134 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | ||||||||||| ||||| || || || |||| || ||||| Sbjct 1983135 TTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1983194 Query 35725 AAATATCTGCATTCTG 35740 || ||||||||| || Sbjct 1983195 GAAGATCTGCATTTTG 1983210 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 1982559 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 1982618 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || |||||| ||| |||||| ||||| | | Sbjct 1982619 AATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATT 1982678 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||| |||| ||||| || || || |||| || ||||| Sbjct 1982679 TTCGATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 1982738 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1982739 GAAGATCTGCAT 1982750 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 1982331 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 1982390 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || |||||| || |||||| ||||| | | Sbjct 1982391 AATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCTTGGATCTTGGCCTTCACATT 1982450 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || || || | || || || | ||||| || || || |||| || ||||| Sbjct 1982451 TTCGATGGTATCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 1982510 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1982511 GAAGATCTGCAT 1982522 >seq1820 Length=90317 Score = 105 bits (116), Expect = 6e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || | ||||||||| | | || || | || ||||||||||| || ||||| Sbjct 66946 CTCTTTCTGGAGGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 66887 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | | | || ||| || || |||||| ||||| ||| Sbjct 66886 GATAAGCCTCTGCTGGTCGGGGCGGATGCACTCTTTATCTTGGATCTTGGCCTTCACAGT 66827 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | ||||||||||| ||||| || || || |||| || ||||| Sbjct 66826 TTCGATTGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCAC 66767 Query 35725 AAATATCTGCATTCTG 35740 || ||||||||| || Sbjct 66766 GAAAATCTGCATTTTG 66751 >seq694 Length=814564 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || || ||||||||||||||| || | | Sbjct 212153 CCACCACGGAGTCTCAACACAAGATGAAGAGTGGACTACTTTTGAATGTTGTAGTCAGAC 212212 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| || | | |||||| || | |||| Sbjct 212213 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATTAGTCTCTGCTGATCAGGAGGA 212272 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| ||||| ||| | | || | | || || | ||| ||| Sbjct 212273 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 212332 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | ||||| || || ||||| | |||||||| || |||||||| ||| Sbjct 212333 TCAAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATCCTG 212383 >seq517 Length=1171097 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || ||||||||||| |||||| | | | Sbjct 1142640 CCACCACGGAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAAAGTTGTAGTTAGAC 1142581 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | |||||| || | |||| Sbjct 1142580 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 1142521 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| ||||| ||| | | || | | || || | ||| ||| Sbjct 1142520 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 1142461 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | ||||| || || ||||| | |||||||| || |||||||| ||| Sbjct 1142460 TCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATCCTG 1142410 >seq292 Length=3256830 Score = 105 bits (116), Expect = 6e-18 Identities = 157/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || ||| || || || |||||||| | || || || | || || Sbjct 1957758 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGACAGAGTGCGGCCATCTTC 1957817 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||| || |||||||| |||| ||||||||||| | || | || |||||| || Sbjct 1957818 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTATCTTG 1957877 Query 35647 GATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||| ||| |||| | ||| | | ||||| || | || ||||| | ||||| || | Sbjct 1957878 GAT-TTTGGCTTTAACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCT 1957936 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGCG 35744 | ||||||| || |||||||| ||||||| ||| |||| Sbjct 1957937 TGCCCGTCAGGGTCTTCACAAAGATCTGCA-TCTCTGCG 1957974 >seq695 Length=815165 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||||||||| || | | Sbjct 16910 CCACCACGGAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 16851 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| |||| || ||||| |||| | |||||| || | |||| Sbjct 16850 AAAGTACGTCCATCTTCCAGTGGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 16791 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| ||||| ||| | | || | | || || | ||| ||| Sbjct 16790 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 16731 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTC-ACAAATATCTGCATTCTG 35740 || | ||||| || || ||||| | |||||| || || |||||||| ||| Sbjct 16730 TCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCAACGAAAATCTGCATCCTG 16679 >seq26 Length=7528108 Score = 100 bits (110), Expect = 3e-16 Identities = 163/234 (70%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | || | || |||||||||||||||||| || | | Sbjct 6810815 CCACCACGAAGTCTCAACACAAGCTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 6810756 Query 35570 AAGGTT---CGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 || || | | || ||||| ||||| || ||||| |||| || |||||| || | | Sbjct 6810755 AAAGTAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGA 6810696 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 |||| | ||||| ||| ||||| ||| | | || | | || || | ||| Sbjct 6810695 GGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCA 6810636 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 |||| | ||||| || || ||||| | ||||||| ||||||||||||||| Sbjct 6810635 ACCTTGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCATGAATATCTGCATTCTG 6810582 >seq108 Length=4373546 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||| | |||||||| | ||| | || ||||||||||||| |||| || | Sbjct 1070436 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGCCTCCTTTTGAATGCTGTAGTCCCAC 1070495 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | || |||| ||||| || || || ||||| | |||||| | | |||| Sbjct 1070496 AGAGTTCGTCCATCTGCCAGTTGCTTGCCAGCCAAGATCAATCTCTGCTGATTAGGAGGA 1070555 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | || | || | || ||||| || Sbjct 1070556 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACGTTTTCTACTCTATCTGAGGATTCAGCC 1070615 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||| | ||||||||||| |||||||| Sbjct 1070616 TCAAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 1070662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450728296912120