Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq61 150 2e-31
seq86 123 3e-23
seq64 120 4e-22
seq54 120 4e-22
>seq61
Length=5536230
Score = 150 bits (166), Expect = 2e-31
Identities = 399/604 (66%), Gaps = 13/604 (2%)
Strand=Plus/Minus
Query 39601 ATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTC 39660
|||||| ||||| | ||||| |||||||| ||| |||||| |||| |||| |||
Sbjct 436393 ATGTTTGAACATCAGACAGGCAAAGTCACAGCGTAAACCCTCACCTCTGCTAAGAGGTTC 436334
Query 39661 GTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAA 39720
| |||| ||||| |||||||| || | | | | |||||| ||||| || |
Sbjct 436333 ACTGGAAACCGTGAGACCAGGCATCAGGCTGCTATCCTGGAGCCAGAATATCCACACAGA 436274
Query 39721 AGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT 39780
||| |||| |||| ||| ||||| | || ||||| || |||| | || || ||
Sbjct 436273 AGAACCAGCAAAGGGGATTCCTTCCATGGCAGCAAAGGCCACAACCCGTTCCCCATAGGC 436214
Query 39781 TGTATCATTATGT---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCAT 39837
| || || | ||||| | |||||||| || | ||||||| | ||||||||
Sbjct 436213 AGCTTCTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTTCCGCAAGGCAT 436154
Query 39838 TGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTAT 39897
|| | || | | ||||| | | || | | |||||||| | | || || ||
Sbjct 436153 CGTCTGGATGGTGCTGAAGAGTAATTCCCTTGCTTTGGCATCTTTAATAGAAGTGTCGAT 436094
Query 39898 TAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACA 39957
| |||||||||||||| |||||| ||||||| || || | || || || | |||||
Sbjct 436093 GAGAAGACTATACATTTCAGAATGGTTGTTTTCCATGGCAGTTTGGAAGCCATGCAAACA 436034
Query 39958 TCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCT-TTCCGCCAAATTTTCATTCACTA 40016
| ||||| |||| || || | || || |||| || | |||||||| ||||
Sbjct 436033 GCGAGCTTCTCTAATCTGAACTTGGCTCCA----CTGTTCCACCCAGTTTTCATTTACTA 435978
Query 40017 TTCCATCACTAGCGGCAAAAAATGCCAATACATG---TTTAATAAAATATTTTTCATCGG 40073
| ||||| | || ||||| || |||| || || | ||||||| |||| || |
Sbjct 435977 TACCATCCCCGGCCGCAAAGAAAGCCAGAACGTGGCAGTGTATAAAATCGCTTTCCTCAG 435918
Query 40074 GTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAA 40133
| ||| | ||||| | || || || || | | | || || |||||||||| ||
Sbjct 435917 GCTTCAGGGATTCCCAGTGCTGAATGTCCTTGGAAAGAGCCACCTC-TCAGCTGTCC-AA 435860
Query 40134 ACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAA 40193
| || ||||| || || || |||| | ||| | |||| | || | || | || || |
Sbjct 435859 AGGAAGCCTCAGCTTTCTTACACATCTGCCAAAGATCATGGTACTCCATAGTGAAGATGA 435800
Query 40194 CAAA 40197
||||
Sbjct 435799 CAAA 435796
>seq86
Length=5199016
Score = 123 bits (136), Expect = 3e-23
Identities = 107/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || || || ||||| ||||| || || || |||||||| ||||| | ||
Sbjct 122616 TGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 122675
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
||||||||||||||||| ||||||||||| ||||| ||||| || || | | ||||||
Sbjct 122676 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 122735
Query 68839 TTTCTAAGACCAT 68851
||||| | |||||
Sbjct 122736 TTTCTTATACCAT 122748
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654
||||||||||| || ||||| ||||||||||| || | || || || |||| | | |
Sbjct 131550 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 131609
Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714
||||| |||||||| || || || | ||| |||||||| | ||| || ||||||| ||
Sbjct 131610 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 131669
Query 69715 TCTAGATATATCGC 69728
|| || || || ||
Sbjct 131670 TCCAGGTAAATAGC 131683
Score = 93.3 bits (102), Expect = 6e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 70336 CTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATA 70395
|| || | ||| |||||||| ||||| || || || | ||| || || ||||| || ||
Sbjct 144148 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCAATCCTTGCTGCCAGGATG 144207
Query 70396 GCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAAT 70455
||||||||||| || | || || | || || || | || ||||| || ||||| | |
Sbjct 144208 GCATAGTCAGGGTGCTTAGTTGTCAAGGTCGCAGCCGTCTCAGCAGCCAAAGTATCCAGT 144267
Query 70456 TCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
|| | ||| ||||| || | |||| || || || ||||||||||
Sbjct 144268 TCCACAGTGGTAACCCCACTGTATAAGCCCTGGATTACTTTCATGG 144313
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566
||||||| || ||||| ||||||||||| ||||||| ||||||||||||||||||||
Sbjct 131096 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACA 131155
Query 69567 CATCAATGACCA 69578
|||||| |||||
Sbjct 131156 CATCAAAGACCA 131167
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || ||||| || | || ||||| || || || ||||| || |||||||| || |||
Sbjct 139174 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 139233
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
|||||||||||||| | || ||||| | ||||| || | | || | |||||||
Sbjct 139234 TATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATCCCCACAGACACCCTCATCAAC 139293
Query 70111 ATATGCTGAGGTCGTTCTACC 70131
||||| || |||| |||| ||
Sbjct 139294 ATATGTTGTGGTCTTTCTGCC 139314
>seq64
Length=5459255
Score = 120 bits (132), Expect = 4e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
|||||||| || || | ||| || ||||| |||||||||||||| ||||| | || ||
Sbjct 1613571 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATGAGACCTCTTTTCTTT 1613512
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| ||
Sbjct 1613511 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 1613452
Query 39761 ACAAGTCTCTCTCC 39774
|| | ||| || ||
Sbjct 1613451 ACCACTCTTTCCCC 1613438
Score = 86.0 bits (94), Expect = 9e-12
Identities = 93/123 (76%), Gaps = 3/123 (2%)
Strand=Plus/Minus
Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046
|||||||| || |||||||||||||| ||||||||||| || |||||||| || ||||
Sbjct 1605375 AAAATCTTACC---AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATA 1605319
Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106
|| |||||||| || ||||| | | | || ||||||| | || ||| ||||
Sbjct 1605318 TGTGAGAGATAAAATACTTCTCATCTGACTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 1605259
Query 40107 ATA 40109
|||
Sbjct 1605258 ATA 1605256
>seq54
Length=5886867
Score = 120 bits (132), Expect = 4e-22
Identities = 102/126 (81%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | ||| || ||||| ||||| |||||||| || ||||| || |
Sbjct 1574943 CCTCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 1575002
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||| | |||||||| |||||||||||||| ||||| || || || || |
Sbjct 1575003 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGG 1575062
Query 39759 CAACAA 39764
| ||||
Sbjct 1575063 CCACAA 1575068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686809292673960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |