Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq54 107 2e-18
seq185 95.1 1e-14
seq64 91.5 1e-13
seq540 86.0 5e-12
>seq54
Length=5886867
Score = 107 bits (118), Expect = 2e-18
Identities = 94/117 (80%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963
|||||| ||||||||||| | ||||||| || ||||| ||||| || |||||||||
Sbjct 1577507 CGGTTTAGCCAAGAAGTTCAGATCACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCC 1577448
Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| ||||| || ||||| || ||||||||||| || || || || ||||| ||||||
Sbjct 1577447 ATGGAAAACATCCATTCAGAGATGTACAGTCTCCTCATTGACACTTACATTAAAGAT 1577391
>seq185
Length=3693041
Score = 95.1 bits (104), Expect = 1e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106
||||||| | || || || ||| | || ||||| ||||| |||||||| ||||
Sbjct 3389629 TGATGGCCCTTCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAATGGTGAGCTGT 3389688
Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166
| || || |||| || || || || |||||||| || || || || || ||||| || |
Sbjct 3389689 CCTGCCAGCTGTACCAGAGGTCGGGGGACATGGGCCTGGGCGTGCCCTTCAACATCGCCA 3389748
Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198
| || || |||||||| || ||||||||||||
Sbjct 3389749 GCTACGCCCTGCTCACCTACATGATTGCACAC 3389780
>seq64
Length=5459255
Score = 91.5 bits (100), Expect = 1e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| |
Sbjct 1627765 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 1627824
Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587
|||| |||| ||| ||||| || | | ||||||
Sbjct 1627825 AACGAGTTGCAGAGTATCAACGTTTTGCAGTCATG 1627859
Score = 82.4 bits (90), Expect = 6e-11
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|||||| | |||||||| ||||| | ||| || ||| ||||||| ||| | ||||||||
Sbjct 1601598 TTTGTCATCTTTCCAATCCAATACCCTGATATTTGGAAAATGTATAAACAGGCACAGGCA 1601657
Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782
|| || |||||||||||||| ||
Sbjct 1601658 TCCTTCTGGACAGCAGAAGAGGT 1601680
>seq540
Length=1121835
Score = 86.0 bits (94), Expect = 5e-12
Identities = 111/154 (72%), Gaps = 6/154 (4%)
Strand=Plus/Plus
Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTT------C 19601
||||||||| || || | |||||| | || || ||||| ||||| ||||| |
Sbjct 878658 TTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGGAGCATGGC 878717
Query 19602 TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661
|||| | ||||| ||||||||||| ||||| || | ||||| ||| | || || ||
Sbjct 878718 TGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAGTTGCTGTCCAAAATTGATGGGGT 878777
Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATG 19695
| |||||||| || || ||||| ||||| |||
Sbjct 878778 AGAGCAACTGAACAACATCTTAGTCATTGGTATG 878811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397399862941945
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |