Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq54 107 2e-18 seq185 95.1 1e-14 seq64 91.5 1e-13 seq540 86.0 5e-12 >seq54 Length=5886867 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 |||||| ||||||||||| | ||||||| || ||||| ||||| || ||||||||| Sbjct 1577507 CGGTTTAGCCAAGAAGTTCAGATCACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCC 1577448 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || ||||| || ||||||||||| || || || || ||||| |||||| Sbjct 1577447 ATGGAAAACATCCATTCAGAGATGTACAGTCTCCTCATTGACACTTACATTAAAGAT 1577391 >seq185 Length=3693041 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| | || || || ||| | || ||||| ||||| |||||||| |||| Sbjct 3389629 TGATGGCCCTTCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAATGGTGAGCTGT 3389688 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || || || || |||||||| || || || || || ||||| || | Sbjct 3389689 CCTGCCAGCTGTACCAGAGGTCGGGGGACATGGGCCTGGGCGTGCCCTTCAACATCGCCA 3389748 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || |||||||| || |||||||||||| Sbjct 3389749 GCTACGCCCTGCTCACCTACATGATTGCACAC 3389780 >seq64 Length=5459255 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 1627765 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 1627824 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 |||| |||| ||| ||||| || | | |||||| Sbjct 1627825 AACGAGTTGCAGAGTATCAACGTTTTGCAGTCATG 1627859 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| ||||| | ||| || ||| ||||||| ||| | |||||||| Sbjct 1601598 TTTGTCATCTTTCCAATCCAATACCCTGATATTTGGAAAATGTATAAACAGGCACAGGCA 1601657 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 1601658 TCCTTCTGGACAGCAGAAGAGGT 1601680 >seq540 Length=1121835 Score = 86.0 bits (94), Expect = 5e-12 Identities = 111/154 (72%), Gaps = 6/154 (4%) Strand=Plus/Plus Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTT------C 19601 ||||||||| || || | |||||| | || || ||||| ||||| ||||| | Sbjct 878658 TTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGGAGCATGGC 878717 Query 19602 TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 |||| | ||||| ||||||||||| ||||| || | ||||| ||| | || || || Sbjct 878718 TGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAGTTGCTGTCCAAAATTGATGGGGT 878777 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 | |||||||| || || ||||| ||||| ||| Sbjct 878778 AGAGCAACTGAACAACATCTTAGTCATTGGTATG 878811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397399862941945