Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq136 208 1e-48 >seq136 Length=3786782 Score = 208 bits (230), Expect = 1e-48 Identities = 614/932 (66%), Gaps = 37/932 (4%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 ||||| ||| || |||| |||||||||||||||||||| || ||| |||| ||||| Sbjct 1751543 CCCCTCAGCAAAGAGGAGGCAGAGTTTCCCATCGCCTACTCTATGGTGGTCCATCACAAA 1751484 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||||| ||| | || | ||||||||||||||||| || || ||||| |||||||| | Sbjct 1751483 ATCGAAATGCTTGACAGGCTCCTGAGGGCCATCTATGCGCCTCAGAATTTCTACTGCATT 1751424 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCAT--CCGGGGCGTCTCGGCCATCGCCAGGT 13848 ||||||||| ||||| | ||| || | ||| || | | | |||||| | Sbjct 1751423 CACGTGGACAGAAAGTCGGAGGACTCCTTTTTGGCCGCGGTGATT--GGCATCGCATCCT 1751366 Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908 ||||| |||||| | ||||| | |||| | |||||||||| || ||||||| Sbjct 1751365 GCTTCAGTAACGTCTTCGTGGCCAGTCAGCTGGAGAGTGTGGTGTACGCTTCGTGGAGTC 1751306 Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGT 13968 | |||||||||||||||| ||||||| ||||| || | | |||| || Sbjct 1751305 GGGTGCAGGCCGACCTCAACTGCATGCAAGACCTCTACAGGATGAAGGCGGACTGGAAGT 1751246 Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGG 14028 || || |||| || ||||| ||||| || || | ||||||||| |||| || || ||| Sbjct 1751245 ACTTGATCAATCTTTGCGGTATGGATTTTCCTATTAAGACCAACTTGGAAATTGTCCGGA 1751186 Query 14029 CGCTGAAGGC---CCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGC---CCAACC 14082 ||| ||| | | |||| | ||| || ||| || | |||| | |||| ||||| Sbjct 1751185 AGCTCAAGTCGCTCATGGGGGACAACAA---CCTCGAAACCGAGAGGATGCCATCCAACA 1751129 Query 14083 ACAAGCTGCACCGCATCAGGAAGAGGC---ACGTGGTGGCCAGCGGCGGCGTGGTGGTCA 14139 | || | | | |||| | || | ||| | | ||| | || | Sbjct 1751128 AAAA--AGAA----AGGTGGAAAAAGCATTATAAGGTTGTTA---ACGGAAAGCTGACGA 1751078 Query 14140 ACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTT 14199 |||| || | |||| || | ||| || || | ||| | || | || | || | Sbjct 1751077 ACACAGGGACTGACAAAGCGCAGCCTCCTCTTGAAACACCCCTGTTCTCAGGCAGTGCCT 1751018 Query 14200 ACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGC 14259 | || | ||||| || ||| ||||| | ||| || || | || | | Sbjct 1751017 ATTTCGTGGTCAGTAGGAAGTACGTGGGGTACGTGCTAGAGAATGAAAAAATCCAAAAGT 1750958 Query 14260 TCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGA 14319 ||||| | ||| ||||||| |||||||| || ||| | || |||||||| | |||| Sbjct 1750957 TCATGGAGTGGGCAAAGGACACCTACAGCCCGGATGAGTATCTCTGGGCCACTATTCAGA 1750898 Query 14320 GAATGTACGGGACGCCCGGGGGGATCCCCGT--TCACGTC--AAGTACGACACCTCGGAC 14375 | | | | || | || ||| |||| || | | | | |||||||||| || ||| Sbjct 1750897 GGA--TCCCAGATGTCC--CGGGCTCCCTGTCCTTAAGCCAGAAGTACGACATGTCTGAC 1750842 Query 14376 ATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGG 14435 ||| || | | ||||| ||||||||||| |||| |||||| || | || || Sbjct 1750841 ATGCACGCGATCGCGAGGTTTGTCAAGTGGCAGTACTTCGAGGGTGACGTTTCCAAGGGC 1750782 Query 14436 GCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGC 14495 |||| ||||| || ||| || ||||||| | || | ||| | ||||| |||| Sbjct 1750781 GCCCCCTACCCACCCTGCAGTGGGGTCCACGTGCGTTCCGTGTGCGTGTTCGGAGCCGGT 1750722 Query 14496 GACGTGAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACG 14555 ||| |||| ||| || || | ||| |||| ||||||||||||||| ||| |||| Sbjct 1750721 GACTTGAACTGGATGCTTCGCAGGCACCACTTGTTTGCCAACAAGTTCGAC-ACG-GACG 1750664 Query 14556 --GACGAGTTCGCCGTGCGCTGTCTGGACGAG 14585 ||| || ||| | | ||| |||| ||| Sbjct 1750663 TTGACCCCTTTGCCATCCAGTGTTTGGATGAG 1750632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658643773392640