Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq185 156 3e-33 seq32 111 1e-19 seq170 87.8 1e-12 >seq185 Length=3693041 Score = 156 bits (172), Expect = 3e-33 Identities = 133/164 (81%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 3389791 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 3389732 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||||||||||||||||||||| ||||| || || ||||| || | | Sbjct 3389731 ACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 3389672 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | ||| |||||||||||||| ||||| || Sbjct 3389671 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCATCAG 3389628 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290 |||| ||||| || |||||||||||||| || || || || || || | || || |||| Sbjct 3386775 TGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTT 3386716 Query 30291 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30350 | |||| ||| ||| ||||||| ||||||| || || ||||| |||||||| | Sbjct 3386715 CTCTGTTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGATTT 3386656 Query 30351 TTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 | || ||||| ||| || || || | ||||| || || Sbjct 3386655 TCACTCCCTTGGAAGACAGTTCCTTAGCATTTGTAGATCC 3386616 >seq32 Length=10841312 Score = 111 bits (122), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || ||||||||||||| || || || || | Sbjct 10199710 ATGAGCTCCTTGTGGAGGTTCCTTGAGATCTCTGCTGAGGACTAAATTAATTCTATCCTT 10199769 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || || |||||||| ||||| |||||||| ||||||| || Sbjct 10199770 TAAAGGTCGATTCTTCTCAGGAATAGAGAACCATGTCTTCCTACCCATAATCACCAAATT 10199829 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 110558 ||| || ||| ||||| || || | ||||| | | || || || || || | Sbjct 10199830 CTGTTTACCTTCTACTGAGGAGGTTGTGGTCATTCTTTGGAAAAACTTGAATTCATTCCT 10199889 Query 110559 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGG 110612 || || |||| ||||| || ||||| || |||||||||||| ||||| Sbjct 10199890 GAG------CGGGGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG 10199938 >seq170 Length=3340629 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || ||||||||||||| || || || || | | ||||| |||||| || || Sbjct 2842989 TTGAGATCTCTGCTGAGGACTAAATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 2843048 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 || |||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 2843049 ATAGAGAACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2843096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406253012338188