Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1820 84.2 1e-11 seq694 82.4 5e-11 >seq1820 Length=90317 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||| |||||||| ||| || || | ||| ||||| ||||| || || | ||||| Sbjct 66963 ACCAGGTGGAGAGTCGACTCTTTCTGGAGGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 66904 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || |||||||| || | | ||| ||||| || | | | ||| || ||| | Sbjct 66903 AGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCGGGGCGGATGCACTCTTTATCTTGG 66844 Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 ||||| || | | | |||||||| | ||||| |||| ||| || || || Sbjct 66843 ATCTTGGCCTTCACAGTTTCGATTGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTG 66784 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || | || ||||| ||||||||||| |||| Sbjct 66783 CCAGTCAGTGTCTTCACGAAAATCTGCATTTTGA 66750 >seq694 Length=814564 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 |||||| | ||| |||||| || |||||||||||| || || || | || || | || Sbjct 212167 CAACACAAGATGAAGAGTGGACTACTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 212226 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 ||| ||||| || || ||||| |||| | ||| || || || || | ||| ||||| || Sbjct 212227 TTCCAGTTGCTTGCCAGCAAAGATTAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 212286 Query 34614 TGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 ||||| |||| | ||||| || | || || || | || || || Sbjct 212287 CTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGT 212346 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || |||| |||||||| ||||||||||| Sbjct 212347 CTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 212379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314685147296237