Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq185 165 7e-36
seq354 113 4e-20
>seq185
Length=3693041
Score = 165 bits (182), Expect = 7e-36
Identities = 133/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||| ||||||||||| || || |||||||| |||||||||| |||||||| | ||||
Sbjct 3389619 GATCTTCCTCTGATGGCCCTTCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAAT 3389678
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|| ||||||||||||||||| || || | ||||| |||||||| | || ||||| |||
Sbjct 3389679 GGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCGGGGGACATGGGCCTGGGCGTGCCCTTC 3389738
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
||||| || || ||||| |||||||| |||||||| || ||
Sbjct 3389739 AACATCGCCAGCTACGCCCTGCTCACCTACATGATTGCACA 3389779
Score = 165 bits (182), Expect = 7e-36
Identities = 133/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| || |||||||| |||||||| ||||| || || |||||||| ||||| || | |||
Sbjct 3389779 TGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCC 3389720
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
||||| ||||| | || || ||||||||||||||||| |||||| | |||||||| |||
Sbjct 3389719 ATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACGTAGAACTGG 3389660
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||||||| |||||||| || || ||||||||||| |||||
Sbjct 3389659 CAGAGGGCATGGCACGGAGGAAGGGCCATCAGAGGAAGATC 3389619
Score = 91.5 bits (100), Expect = 1e-13
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 34304 AAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTG 34363
||||| || || ||| ||| ||||| |||||||| || | |||||||||||||| ||
Sbjct 3386631 AAGGAACTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGGTCTCGAGACTTCTTG 3386690
Query 34364 GACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCA 34422
|||| | ||| ||| ||| | | || || || || || ||||| || || || || ||
Sbjct 3386691 GACAGCCTGGGATTCTCCAAC-AGAGAAGAAGGGGATTTAGGCCCAGTTTATGGCTTTCA 3386749
Query 34423 GTGGAGACACTTTGGGGCGGAGTA 34446
|||||| || |||||||| || ||
Sbjct 3386750 GTGGAGGCATTTTGGGGCAGAATA 3386773
Score = 91.5 bits (100), Expect = 1e-13
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || |||||||| || |||||||| || || || || ||||| || || || || ||
Sbjct 3386773 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCT 3386714
Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017
| | ||| ||| ||| | |||||| |||||||||||||| | || |||||||| ||
Sbjct 3386713 CT-GTTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGATTTT 3386655
Query 7018 CACCCCCCGGGACGAGAGCTCCTT 7041
||| ||| ||| || || |||||
Sbjct 3386654 CACTCCCTTGGAAGACAGTTCCTT 3386631
>seq354
Length=1792354
Score = 113 bits (124), Expect = 4e-20
Identities = 434/675 (64%), Gaps = 19/675 (3%)
Strand=Plus/Plus
Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553
|||||||||| ||||| || | || |||| || ||||| || || || ||
Sbjct 161421 ATTTTGAGCTTCGGGAAAGGCCTTGGTTCTCACTGAAGCTGCATTTTCAGAGTTTCAGTG 161480
Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613
|| |||||||| ||||| ||| | || |||| | | || || || || ||
Sbjct 161481 TGATTCAGGTAAATATGTATATCTTC-AAGATATGTATGAAGTCACCTGGCTTCACGCCT 161539
Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673
|| || || |||| ||| ||||| | || ||| | |||||| ||||| |
Sbjct 161540 GTGATGTGTGCAATCAGGTAGATGAGCCAGGTGTGGAGAGCCAAGTTGAAGGGCACAGCC 161599
Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAG 6733
|| ||||||||||| | | | || ||||||||||||||||| || || | || ||
Sbjct 161600 AAACCCATGTCTCCTGCCCTCCGGTACAGCTGGCAGGACAGCTCACCGCTCACCAC--AG 161657
Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793
| | | ||||| || || || ||||| ||||| || || || | ||
Sbjct 161658 A----------GATCTGGCAGGGAGGTAGGGCCATAAGAGGAAGTGTTTTTGGACTTCAA 161707
Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAA-GGTGTCGATCACGTACTG 6852
| |||| ||| |||||||| | | ||| | ||||| |||| | ||| | ||
Sbjct 161708 CCACACAAGCTGATTCTTCTGTCCT-TGAGTTTGGTTTCAATTGTGTGAAACACCTTTTG 161766
Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAA 6911
||| ||||| |||| || || ||||| || | ||| | | | || || ||||||
Sbjct 161767 CAGTTGGTCTACTCCTTGACCTGAATAATCTGAATTCTCATCTTTG-TATTCTACCCCAA 161825
Query 6912 AGTG--TCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA 6969
| || ||||||||| | || || | || || || || || | | | | | |||
Sbjct 161826 AATGCCTCTCCACTGAGAGCCATAAATTGGACCTAAATCCCCTTTTTGTCTATTGGAGAA 161885
Query 6970 CCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGA 7029
||| | ||||||| ||||||| || | | | |||||||| ||||| ||| |||
Sbjct 161886 TCCCAGGTTGTCCAAGAAGTCTCAGGAGGCATTGACTTCCCAGATTTTCACTCCCTTGGA 161945
Query 7030 CGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCC 7089
|| | ||||| | || || | ||| | | |||||||| | ||||| | || |
Sbjct 161946 AGACTGTTCCTTAGCATTTGTAGAGCCCTTGATAAACCACAGAATATCCTCCAAAACACT 162005
Query 7090 CTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGC 7149
||| || | | ||| | | |||||||| |||||||| | | ||| |||| | |
Sbjct 162006 CTTTCAAAATATACGCATTATTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGTGCAC 162065
Query 7150 CTGTGTGCCGAACAC 7164
||| |||| |||||
Sbjct 162066 CTGCATGCCAAACAC 162080
Score = 113 bits (124), Expect = 4e-20
Identities = 434/675 (64%), Gaps = 19/675 (3%)
Strand=Plus/Minus
Query 34181 GTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAA 34240
||||| |||| |||| | |||| ||| | | |||||||| |||||||| | |
Sbjct 162080 GTGTTTGGCATGCAGGTGCACTACAGCCTGAGAGATGAATTTCCTCTGCTGACAATAATG 162021
Query 34241 CGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAAC 34300
||| | | || ||| | || | ||||| | |||||||| | | ||| | || ||
Sbjct 162020 CGTATATTTTGAAAGAGTGTTTTGGAGGATATTCTGTGGTTTATCAAGGGCTCTACAAAT 161961
Query 34301 ACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTT 34360
| ||||| | || ||| ||| ||||| |||||||| | | | || |||||||
Sbjct 161960 GCTAAGGAACAGTCTTCCAAGGGAGTGAAAATCTGGGAAGTCAATGCCTCCTGAGACTTC 161901
Query 34361 CTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTC 34420
||||||| | ||| ||| | | | | | || || || || || | || || |
Sbjct 161900 TTGGACAACCTGGGATTCTCCAATAGACAAAAAGGGGATTTAGGTCCAATTTATGGCTCT 161841
Query 34421 CAGTGGAGA--CACTTTGGGGCGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAG 34477
||||||||| || ||||||| || || | | | ||| | || ||||| || ||
Sbjct 161840 CAGTGGAGAGGCATTTTGGGGTAGAATA-CAAAGATGAGAATTCAGATTATTCAGGTCAA 161782
Query 34478 GGAGCGGACCAGCTGCAGTACGTGATCGACACC-TTGAAGCGGAACCCTGATGACAGAAG 34536
|||| ||||| ||||| | ||| | |||| ||||| | ||| | | ||||||||
Sbjct 161781 GGAGTAGACCAACTGCAAAAGGTGTTTCACACAATTGAAACCAAACTCA-AGGACAGAAG 161723
Query 34537 GATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCA 34596
||| |||| | || | || || || ||||| ||||| || || || |||||
Sbjct 161722 AATCAGCTTGTGTGGTTGAAGTCCAAAAACACTTCCTCTTATGGCCCTACCTCCCTGCCA 161663
Query 34597 CACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATC 34656
| | ||| || | || || ||||||||||||||||| || | | |
Sbjct 161662 GATC----------TCT--GTGGTGAGCGGTGAGCTGTCCTGCCAGCTGTACCGGAGGGC 161615
Query 34657 GGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACAT 34716
||||||||||| || | ||||| |||||| | ||| || | ||||| ||| |
Sbjct 161614 AGGAGACATGGGTTTGGCTGTGCCCTTCAACTTGGCTCTCCACACCTGGCTCATCTACCT 161555
Query 34717 GATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCA 34776
||| || || || || || || || || | | |||| || | ||| ||
Sbjct 161554 GATTGCACACATCACAGGCGTGAAGCCAGGTGACTTCATACATATCTT-GAAGATATACA 161496
Query 34777 TATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTT 34836
||| |||||||| |||| || || || ||||| || |||| || | || ||
Sbjct 161495 TATTTACCTGAATCACACTGAAACTCTGAAAATGCAGCTTCAGTGAGAACCAAGGCCTTT 161436
Query 34837 CCCCCAGCTCAAAAT 34851
||| ||||||||||
Sbjct 161435 CCCGAAGCTCAAAAT 161421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448197463588080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |