Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq185 165 7e-36 seq354 113 4e-20 >seq185 Length=3693041 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| || || |||||||| |||||||||| |||||||| | |||| Sbjct 3389619 GATCTTCCTCTGATGGCCCTTCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAAT 3389678 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || | ||||| |||||||| | || ||||| ||| Sbjct 3389679 GGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCGGGGGACATGGGCCTGGGCGTGCCCTTC 3389738 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| |||||||| |||||||| || || Sbjct 3389739 AACATCGCCAGCTACGCCCTGCTCACCTACATGATTGCACA 3389779 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| |||||||| ||||| || || |||||||| ||||| || | ||| Sbjct 3389779 TGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCC 3389720 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| ||||| | || || ||||||||||||||||| |||||| | |||||||| ||| Sbjct 3389719 ATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACGTAGAACTGG 3389660 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||||| || || ||||||||||| ||||| Sbjct 3389659 CAGAGGGCATGGCACGGAGGAAGGGCCATCAGAGGAAGATC 3389619 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 34304 AAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTG 34363 ||||| || || ||| ||| ||||| |||||||| || | |||||||||||||| || Sbjct 3386631 AAGGAACTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGGTCTCGAGACTTCTTG 3386690 Query 34364 GACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCA 34422 |||| | ||| ||| ||| | | || || || || || ||||| || || || || || Sbjct 3386691 GACAGCCTGGGATTCTCCAAC-AGAGAAGAAGGGGATTTAGGCCCAGTTTATGGCTTTCA 3386749 Query 34423 GTGGAGACACTTTGGGGCGGAGTA 34446 |||||| || |||||||| || || Sbjct 3386750 GTGGAGGCATTTTGGGGCAGAATA 3386773 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || |||||||| || || || || ||||| || || || || || Sbjct 3386773 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCT 3386714 Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | | ||| ||| ||| | |||||| |||||||||||||| | || |||||||| || Sbjct 3386713 CT-GTTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGATTTT 3386655 Query 7018 CACCCCCCGGGACGAGAGCTCCTT 7041 ||| ||| ||| || || ||||| Sbjct 3386654 CACTCCCTTGGAAGACAGTTCCTT 3386631 >seq354 Length=1792354 Score = 113 bits (124), Expect = 4e-20 Identities = 434/675 (64%), Gaps = 19/675 (3%) Strand=Plus/Plus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 |||||||||| ||||| || | || |||| || ||||| || || || || Sbjct 161421 ATTTTGAGCTTCGGGAAAGGCCTTGGTTCTCACTGAAGCTGCATTTTCAGAGTTTCAGTG 161480 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || |||||||| ||||| ||| | || |||| | | || || || || || Sbjct 161481 TGATTCAGGTAAATATGTATATCTTC-AAGATATGTATGAAGTCACCTGGCTTCACGCCT 161539 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 || || || |||| ||| ||||| | || ||| | |||||| ||||| | Sbjct 161540 GTGATGTGTGCAATCAGGTAGATGAGCCAGGTGTGGAGAGCCAAGTTGAAGGGCACAGCC 161599 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAG 6733 || ||||||||||| | | | || ||||||||||||||||| || || | || || Sbjct 161600 AAACCCATGTCTCCTGCCCTCCGGTACAGCTGGCAGGACAGCTCACCGCTCACCAC--AG 161657 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793 | | | ||||| || || || ||||| ||||| || || || | || Sbjct 161658 A----------GATCTGGCAGGGAGGTAGGGCCATAAGAGGAAGTGTTTTTGGACTTCAA 161707 Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAA-GGTGTCGATCACGTACTG 6852 | |||| ||| |||||||| | | ||| | ||||| |||| | ||| | || Sbjct 161708 CCACACAAGCTGATTCTTCTGTCCT-TGAGTTTGGTTTCAATTGTGTGAAACACCTTTTG 161766 Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAA 6911 ||| ||||| |||| || || ||||| || | ||| | | | || || |||||| Sbjct 161767 CAGTTGGTCTACTCCTTGACCTGAATAATCTGAATTCTCATCTTTG-TATTCTACCCCAA 161825 Query 6912 AGTG--TCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA 6969 | || ||||||||| | || || | || || || || || | | | | | ||| Sbjct 161826 AATGCCTCTCCACTGAGAGCCATAAATTGGACCTAAATCCCCTTTTTGTCTATTGGAGAA 161885 Query 6970 CCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGA 7029 ||| | ||||||| ||||||| || | | | |||||||| ||||| ||| ||| Sbjct 161886 TCCCAGGTTGTCCAAGAAGTCTCAGGAGGCATTGACTTCCCAGATTTTCACTCCCTTGGA 161945 Query 7030 CGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCC 7089 || | ||||| | || || | ||| | | |||||||| | ||||| | || | Sbjct 161946 AGACTGTTCCTTAGCATTTGTAGAGCCCTTGATAAACCACAGAATATCCTCCAAAACACT 162005 Query 7090 CTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGC 7149 ||| || | | ||| | | |||||||| |||||||| | | ||| |||| | | Sbjct 162006 CTTTCAAAATATACGCATTATTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGTGCAC 162065 Query 7150 CTGTGTGCCGAACAC 7164 ||| |||| ||||| Sbjct 162066 CTGCATGCCAAACAC 162080 Score = 113 bits (124), Expect = 4e-20 Identities = 434/675 (64%), Gaps = 19/675 (3%) Strand=Plus/Minus Query 34181 GTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAA 34240 ||||| |||| |||| | |||| ||| | | |||||||| |||||||| | | Sbjct 162080 GTGTTTGGCATGCAGGTGCACTACAGCCTGAGAGATGAATTTCCTCTGCTGACAATAATG 162021 Query 34241 CGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAAC 34300 ||| | | || ||| | || | ||||| | |||||||| | | ||| | || || Sbjct 162020 CGTATATTTTGAAAGAGTGTTTTGGAGGATATTCTGTGGTTTATCAAGGGCTCTACAAAT 161961 Query 34301 ACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTT 34360 | ||||| | || ||| ||| ||||| |||||||| | | | || ||||||| Sbjct 161960 GCTAAGGAACAGTCTTCCAAGGGAGTGAAAATCTGGGAAGTCAATGCCTCCTGAGACTTC 161901 Query 34361 CTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTC 34420 ||||||| | ||| ||| | | | | | || || || || || | || || | Sbjct 161900 TTGGACAACCTGGGATTCTCCAATAGACAAAAAGGGGATTTAGGTCCAATTTATGGCTCT 161841 Query 34421 CAGTGGAGA--CACTTTGGGGCGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAG 34477 ||||||||| || ||||||| || || | | | ||| | || ||||| || || Sbjct 161840 CAGTGGAGAGGCATTTTGGGGTAGAATA-CAAAGATGAGAATTCAGATTATTCAGGTCAA 161782 Query 34478 GGAGCGGACCAGCTGCAGTACGTGATCGACACC-TTGAAGCGGAACCCTGATGACAGAAG 34536 |||| ||||| ||||| | ||| | |||| ||||| | ||| | | |||||||| Sbjct 161781 GGAGTAGACCAACTGCAAAAGGTGTTTCACACAATTGAAACCAAACTCA-AGGACAGAAG 161723 Query 34537 GATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCA 34596 ||| |||| | || | || || || ||||| ||||| || || || ||||| Sbjct 161722 AATCAGCTTGTGTGGTTGAAGTCCAAAAACACTTCCTCTTATGGCCCTACCTCCCTGCCA 161663 Query 34597 CACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATC 34656 | | ||| || | || || ||||||||||||||||| || | | | Sbjct 161662 GATC----------TCT--GTGGTGAGCGGTGAGCTGTCCTGCCAGCTGTACCGGAGGGC 161615 Query 34657 GGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACAT 34716 ||||||||||| || | ||||| |||||| | ||| || | ||||| ||| | Sbjct 161614 AGGAGACATGGGTTTGGCTGTGCCCTTCAACTTGGCTCTCCACACCTGGCTCATCTACCT 161555 Query 34717 GATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCA 34776 ||| || || || || || || || || | | |||| || | ||| || Sbjct 161554 GATTGCACACATCACAGGCGTGAAGCCAGGTGACTTCATACATATCTT-GAAGATATACA 161496 Query 34777 TATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTT 34836 ||| |||||||| |||| || || || ||||| || |||| || | || || Sbjct 161495 TATTTACCTGAATCACACTGAAACTCTGAAAATGCAGCTTCAGTGAGAACCAAGGCCTTT 161436 Query 34837 CCCCCAGCTCAAAAT 34851 ||| |||||||||| Sbjct 161435 CCCGAAGCTCAAAAT 161421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448197463588080