Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq32 232 6e-56 seq59 163 2e-35 seq13 161 8e-35 seq173 118 9e-22 seq483 116 3e-21 seq185 84.2 2e-11 >seq32 Length=10841312 Score = 232 bits (256), Expect = 6e-56 Identities = 385/551 (70%), Gaps = 9/551 (2%) Strand=Plus/Minus Query 2137 ACTCTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTG 2196 || || ||||| || || ||||| || | || |||||||| || || || || | ||| Sbjct 10199964 ACGCTCAACTGCATCGCCGCTGTTTCCCAGAACATGGGCATCGGCAAGAACGGGGACCTG 10199905 Query 2197 CCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTCCACT 2256 || ||||| || || | |||||||| || ||| |||| |||||| | | ||| | Sbjct 10199904 CCCTGGCCCCCGCTCAGGAATGAATTCAAGTTTTTCCAAAGAATGACCACAACCTCCTCA 10199845 Query 2257 GACTTA---AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATT 2313 | | ||||||||| | || |||||||| || ||||||||||| || |||| | Sbjct 10199844 GTAGAAGGTAAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCC--TG 10199787 Query 2314 AAAAGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGC 2371 | ||| | | ||||| || | ||||| ||| | || ||||| ||| | || || || | Sbjct 10199786 AGAAGAATCGACCTTTAAAGGATAGAATTAATTTAGTCCTCAGCAGAGATCTCAAGGAAC 10199727 Query 2372 CACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAG 2431 | |||| || ||||| ||| |||| |||||| | ||| | || | || |||| | Sbjct 10199726 CTCCACAAGGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGCCTTAAAACTTATTGAAC 10199667 Query 2432 GACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATG 2491 |||||||||| | | | ||||| | | |||||||| | || || || ||||| ||| Sbjct 10199666 AACCAGAATTAGCAAATAAAGTGGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTATA 10199607 Query 2492 AGGAGAGC-ATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAA 2550 |||| ||| || | | | | || | | | || ||| | ||||||||| |||| || Sbjct 10199606 AGGA-AGCTATGAACAAAGCAGGCCATCTTAGACTATTTGTGACAAGGATTATGCAGGAA 10199548 Query 2551 TTTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAA 2610 |||||| |||| |||| || ||||||||| || | ||||| |||| || | ||| Sbjct 10199547 TTTGAAAGTGACACATTTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGAA 10199488 Query 2611 TTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATA 2670 | |||||||||| |||| || || || || || || |||| ||||||||||| || Sbjct 10199487 TACCCAGGTGTTCTTTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTA 10199428 Query 2671 TATGaaaaaaa 2681 ||||| || || Sbjct 10199427 TATGAGAAGAA 10199417 >seq59 Length=5595854 Score = 163 bits (180), Expect = 2e-35 Identities = 183/245 (75%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 ||||| | ||||| |||||||| ||||| || | |||| ||||||||| ||| Sbjct 4351987 GAAGTCTTGATTGTGACATGGCAGAAAGTCAAGCCTGTTGGCCCGGAAAACATGATCACC 4351928 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || || |||| |||||||| || ||||| || || || || || || || || || Sbjct 4351927 TTCAGCAAAAACCATGGGGTTGTGGTCCAGCCCGCCTATAAGGACAAGATAAATATCACC 4351868 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 ||||| | ||| | ||| |||| || ||||||||||| || || | || ||||||||| Sbjct 4351867 GAGCTGGAACTCAAGAACTCAACCATTACCTTCTGGAATACCACCCTAGAGGATGAAGGG 4351808 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520 || |||||||| | || | |||||||| ||||||||||| ||||||| || || || Sbjct 4351807 TGTTACAAGTGCCTCTTCCATACTTTTGGTTCTGGGAAGATCTCAGGAACAGCCTGCCTC 4351748 Query 1521 ACCCT 1525 ||||| Sbjct 4351747 ACCCT 4351743 >seq13 Length=11540666 Score = 161 bits (178), Expect = 8e-35 Identities = 286/416 (69%), Gaps = 1/416 (0%) Strand=Plus/Minus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGG 2322 |||||||| |||| ||||| || || |||||||| | || ||||||| | || | | Sbjct 6499707 AAACAGAAATTTGTGATTATAGGTAGGAAGACATGAATCTCTCTTCCCAGAAGAA-CTGA 6499649 Query 2323 CCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGG 2382 ||||| || ||||||| ||| || ||||||||||| | || || || || |||| | Sbjct 6499648 CCTTTAAAGGACAGAATTAATTTGCTTCTCAGTAGAGAACTCAAGGAACCTCCACAAGAT 6499589 Query 2383 GCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTA 2442 ||||| ||| | || |||||| | ||| | || | || |||| | |||||||||| Sbjct 6499588 GCTCATTTTCTAGCCAAAAGTCTGGATGATGCCTTAAAACTTATTTAACAACCAGAATTA 6499529 Query 2443 AAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATT 2502 | | | | ||||| | | | |||||| | || || || |||| | | |||| || Sbjct 6499528 ACAAAGAAAGTGGACATGGTCTGGATAGTGGGAGGCAGTTCTGCTTGTAAGGAAGCCACA 6499469 Query 2503 ACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGAT 2562 | | ||| || | | | || | | | |||||||| |||| |||||||| || Sbjct 6499468 AACAAATCACGCCATCTCAAACTATCTGTGACAAGGATCATGCAGGAATTTGAAAACGAC 6499409 Query 2563 ACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTT 2622 |||| | ||||||| | || | |||||||| | ||| | |||| ||| ||| | Sbjct 6499408 ACATTTCTTCCAGAAACTGATTTGGGGAAATACAAGCTTCTTCCAGAATACCCAAGTGCT 6499349 Query 2623 CCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaa 2678 | |||| || ||||| ||||| | |||| || |||||||| |||||| |||| Sbjct 6499348 CTTTCTGATGTCCAAGAGGAAAAACGTATTAAATGGAAATTTGAAATATATAAAAA 6499293 >seq173 Length=3263731 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 2138390 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 2138331 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||| ||||| |||||||| | | || | |||| || |||||| Sbjct 2138330 TTCGGTGGGGTCATGTGCGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 2138271 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 2138270 ATCGCCCTGTGGATGACTGA 2138251 >seq483 Length=1248410 Score = 116 bits (128), Expect = 3e-21 Identities = 284/424 (67%), Gaps = 16/424 (4%) Strand=Plus/Minus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGG 2322 ||||||||| | || |||||| | || |||||| |||| || ||| | || | Sbjct 280072 AAACAGAATTTGGTGATTATGAGTAGGAAGACAGGGTTCTCTATTCTCGAGAAGAATCTA 280013 Query 2323 CCTTTGAACAACAGAATAAATCTGGTTCTCAGT-AGACACCTTAAAGAGCCACCACGTGG 2381 ||||| || ||||| | || | || |||||| ||| |||| || | || |||| | Sbjct 280012 CCTTTAAAGGACAGAGTTGATTTAGTGCTCAGTTAGAGACCTCAAGAAACCTCCACAAGA 279953 Query 2382 GGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGA-CCAGAAT 2440 ||||| ||| |||| ||||| | ||| | || || ||| | | || | ||||||| Sbjct 279952 AGCTCATTTTCTTGCCGAAAGTCTGGATGATGC-CTTAAAAGTTTTTGAGCAACCAGAAT 279894 Query 2441 TAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCA 2500 || | | | | ||||| | ||| |||| | || || || ||||| ||| |||| || Sbjct 279893 TAGCAAATAAAGAGGATATGGTTTAGATAGTGGGAGGCAGTTCTGTTTATAAGGAAGCCA 279834 Query 2501 TTA-CAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGT 2559 | | |||| | || | | | || ||| | ||| ||||| |||| |||||||| || Sbjct 279833 TGAACAAGC-CAGGCTACCTTAGACTATTTGTGACAGGGATTATGCAGGAATTTGAAAGT 279775 Query 2560 GATACATACTT--CCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAG 2617 || ||| || |||||||||| || | ||||| |||| || |||| Sbjct 279774 GACCCATTTTTTCCCCAGAAATTGATTTAGAGAAATAAAAACTTCTC---------CCAG 279724 Query 2618 GTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaa 2677 |||||| |||| || || || || | || |||| ||||||||||| ||||||| | Sbjct 279723 GTGTTCTTTCTGATGTCCAGGAGGAGGAAGGCATTAAGTACAAATTTGAAGTATATGATA 279664 Query 2678 aaaa 2681 | || Sbjct 279663 AGAA 279660 >seq185 Length=3693041 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | ||| ||||||||||| || | || ||||||||| | || || || Sbjct 3389791 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 3389732 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| |||||||| | || |||||||||| ||||| || ||||| || || | Sbjct 3389731 ACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 3389672 Query 118654 ACATAAAACTG 118664 || || ||||| Sbjct 3389671 ACGTAGAACTG 3389661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414418258908196