Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq32 232 6e-56
seq59 163 2e-35
seq13 161 8e-35
seq173 118 9e-22
seq483 116 3e-21
seq185 84.2 2e-11
>seq32
Length=10841312
Score = 232 bits (256), Expect = 6e-56
Identities = 385/551 (70%), Gaps = 9/551 (2%)
Strand=Plus/Minus
Query 2137 ACTCTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTG 2196
|| || ||||| || || ||||| || | || |||||||| || || || || | |||
Sbjct 10199964 ACGCTCAACTGCATCGCCGCTGTTTCCCAGAACATGGGCATCGGCAAGAACGGGGACCTG 10199905
Query 2197 CCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTCCACT 2256
|| ||||| || || | |||||||| || ||| |||| |||||| | | ||| |
Sbjct 10199904 CCCTGGCCCCCGCTCAGGAATGAATTCAAGTTTTTCCAAAGAATGACCACAACCTCCTCA 10199845
Query 2257 GACTTA---AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATT 2313
| | ||||||||| | || |||||||| || ||||||||||| || |||| |
Sbjct 10199844 GTAGAAGGTAAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCC--TG 10199787
Query 2314 AAAAGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGC 2371
| ||| | | ||||| || | ||||| ||| | || ||||| ||| | || || || |
Sbjct 10199786 AGAAGAATCGACCTTTAAAGGATAGAATTAATTTAGTCCTCAGCAGAGATCTCAAGGAAC 10199727
Query 2372 CACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAG 2431
| |||| || ||||| ||| |||| |||||| | ||| | || | || |||| |
Sbjct 10199726 CTCCACAAGGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGCCTTAAAACTTATTGAAC 10199667
Query 2432 GACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATG 2491
|||||||||| | | | ||||| | | |||||||| | || || || ||||| |||
Sbjct 10199666 AACCAGAATTAGCAAATAAAGTGGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTATA 10199607
Query 2492 AGGAGAGC-ATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAA 2550
|||| ||| || | | | | || | | | || ||| | ||||||||| |||| ||
Sbjct 10199606 AGGA-AGCTATGAACAAAGCAGGCCATCTTAGACTATTTGTGACAAGGATTATGCAGGAA 10199548
Query 2551 TTTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAA 2610
|||||| |||| |||| || ||||||||| || | ||||| |||| || | |||
Sbjct 10199547 TTTGAAAGTGACACATTTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGAA 10199488
Query 2611 TTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATA 2670
| |||||||||| |||| || || || || || || |||| ||||||||||| ||
Sbjct 10199487 TACCCAGGTGTTCTTTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTA 10199428
Query 2671 TATGaaaaaaa 2681
||||| || ||
Sbjct 10199427 TATGAGAAGAA 10199417
>seq59
Length=5595854
Score = 163 bits (180), Expect = 2e-35
Identities = 183/245 (75%), Gaps = 0/245 (0%)
Strand=Plus/Minus
Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340
||||| | ||||| |||||||| ||||| || | |||| ||||||||| |||
Sbjct 4351987 GAAGTCTTGATTGTGACATGGCAGAAAGTCAAGCCTGTTGGCCCGGAAAACATGATCACC 4351928
Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400
|| || || |||| |||||||| || ||||| || || || || || || || || ||
Sbjct 4351927 TTCAGCAAAAACCATGGGGTTGTGGTCCAGCCCGCCTATAAGGACAAGATAAATATCACC 4351868
Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460
||||| | ||| | ||| |||| || ||||||||||| || || | || |||||||||
Sbjct 4351867 GAGCTGGAACTCAAGAACTCAACCATTACCTTCTGGAATACCACCCTAGAGGATGAAGGG 4351808
Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520
|| |||||||| | || | |||||||| ||||||||||| ||||||| || || ||
Sbjct 4351807 TGTTACAAGTGCCTCTTCCATACTTTTGGTTCTGGGAAGATCTCAGGAACAGCCTGCCTC 4351748
Query 1521 ACCCT 1525
|||||
Sbjct 4351747 ACCCT 4351743
>seq13
Length=11540666
Score = 161 bits (178), Expect = 8e-35
Identities = 286/416 (69%), Gaps = 1/416 (0%)
Strand=Plus/Minus
Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGG 2322
|||||||| |||| ||||| || || |||||||| | || ||||||| | || | |
Sbjct 6499707 AAACAGAAATTTGTGATTATAGGTAGGAAGACATGAATCTCTCTTCCCAGAAGAA-CTGA 6499649
Query 2323 CCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGG 2382
||||| || ||||||| ||| || ||||||||||| | || || || || |||| |
Sbjct 6499648 CCTTTAAAGGACAGAATTAATTTGCTTCTCAGTAGAGAACTCAAGGAACCTCCACAAGAT 6499589
Query 2383 GCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTA 2442
||||| ||| | || |||||| | ||| | || | || |||| | ||||||||||
Sbjct 6499588 GCTCATTTTCTAGCCAAAAGTCTGGATGATGCCTTAAAACTTATTTAACAACCAGAATTA 6499529
Query 2443 AAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATT 2502
| | | | ||||| | | | |||||| | || || || |||| | | |||| ||
Sbjct 6499528 ACAAAGAAAGTGGACATGGTCTGGATAGTGGGAGGCAGTTCTGCTTGTAAGGAAGCCACA 6499469
Query 2503 ACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGAT 2562
| | ||| || | | | || | | | |||||||| |||| |||||||| ||
Sbjct 6499468 AACAAATCACGCCATCTCAAACTATCTGTGACAAGGATCATGCAGGAATTTGAAAACGAC 6499409
Query 2563 ACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTT 2622
|||| | ||||||| | || | |||||||| | ||| | |||| ||| ||| |
Sbjct 6499408 ACATTTCTTCCAGAAACTGATTTGGGGAAATACAAGCTTCTTCCAGAATACCCAAGTGCT 6499349
Query 2623 CCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaa 2678
| |||| || ||||| ||||| | |||| || |||||||| |||||| ||||
Sbjct 6499348 CTTTCTGATGTCCAAGAGGAAAAACGTATTAAATGGAAATTTGAAATATATAAAAA 6499293
>seq173
Length=3263731
Score = 118 bits (130), Expect = 9e-22
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | |||||||| ||||||||| | ||||| || |||||||||
Sbjct 2138390 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 2138331
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||| ||||| |||||||| | | || | |||| || ||||||
Sbjct 2138330 TTCGGTGGGGTCATGTGCGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 2138271
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 2138270 ATCGCCCTGTGGATGACTGA 2138251
>seq483
Length=1248410
Score = 116 bits (128), Expect = 3e-21
Identities = 284/424 (67%), Gaps = 16/424 (4%)
Strand=Plus/Minus
Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGG 2322
||||||||| | || |||||| | || |||||| |||| || ||| | || |
Sbjct 280072 AAACAGAATTTGGTGATTATGAGTAGGAAGACAGGGTTCTCTATTCTCGAGAAGAATCTA 280013
Query 2323 CCTTTGAACAACAGAATAAATCTGGTTCTCAGT-AGACACCTTAAAGAGCCACCACGTGG 2381
||||| || ||||| | || | || |||||| ||| |||| || | || |||| |
Sbjct 280012 CCTTTAAAGGACAGAGTTGATTTAGTGCTCAGTTAGAGACCTCAAGAAACCTCCACAAGA 279953
Query 2382 GGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGA-CCAGAAT 2440
||||| ||| |||| ||||| | ||| | || || ||| | | || | |||||||
Sbjct 279952 AGCTCATTTTCTTGCCGAAAGTCTGGATGATGC-CTTAAAAGTTTTTGAGCAACCAGAAT 279894
Query 2441 TAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCA 2500
|| | | | | ||||| | ||| |||| | || || || ||||| ||| |||| ||
Sbjct 279893 TAGCAAATAAAGAGGATATGGTTTAGATAGTGGGAGGCAGTTCTGTTTATAAGGAAGCCA 279834
Query 2501 TTA-CAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGT 2559
| | |||| | || | | | || ||| | ||| ||||| |||| |||||||| ||
Sbjct 279833 TGAACAAGC-CAGGCTACCTTAGACTATTTGTGACAGGGATTATGCAGGAATTTGAAAGT 279775
Query 2560 GATACATACTT--CCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAG 2617
|| ||| || |||||||||| || | ||||| |||| || ||||
Sbjct 279774 GACCCATTTTTTCCCCAGAAATTGATTTAGAGAAATAAAAACTTCTC---------CCAG 279724
Query 2618 GTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaa 2677
|||||| |||| || || || || | || |||| ||||||||||| ||||||| |
Sbjct 279723 GTGTTCTTTCTGATGTCCAGGAGGAGGAAGGCATTAAGTACAAATTTGAAGTATATGATA 279664
Query 2678 aaaa 2681
| ||
Sbjct 279663 AGAA 279660
>seq185
Length=3693041
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|| ||||| | ||| ||||||||||| || | || ||||||||| | || || ||
Sbjct 3389791 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 3389732
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
|| ||||| |||||||| | || |||||||||| ||||| || ||||| || || |
Sbjct 3389731 ACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 3389672
Query 118654 ACATAAAACTG 118664
|| || |||||
Sbjct 3389671 ACGTAGAACTG 3389661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414418258908196
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |