Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq694 131 1e-25 seq695 129 4e-25 seq517 127 1e-24 seq26 113 3e-20 seq292 111 1e-19 seq108 100 2e-16 seq101 95.1 8e-15 seq1820 84.2 1e-11 >seq694 Length=814564 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||| ||||| || || |||||||| || ||||| || || Sbjct 212379 ATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACCATCACTCTTGAGGTTGAACCCTCG 212320 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| |||| || ||| || || ||||| | || || ||||| Sbjct 212319 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 212260 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | |||| ||||| ||||| ||||||||||| | ||| ||||| || |||||| Sbjct 212259 CAGAGACTAATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 212200 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| ||||||| | ||| | || || || Sbjct 212199 ATTCAAAAGTAGTCCACTCTTCATCTTGTGTTGAG 212165 >seq695 Length=815165 Score = 129 bits (142), Expect = 4e-25 Identities = 159/216 (74%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTT-AAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| |||||||| ||||| || || ||||||||||| ||||| || | Sbjct 16683 ATGCAGATTTTCGTTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTTGAACCCTC 16742 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || | |||| |||| || ||| || || ||||| | || || ||||| Sbjct 16743 GGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCA 16802 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| | ||||||||| | ||| ||||| || ||||| Sbjct 16803 GCAGAGACTGATCTTTGCTGGCAAGCCACTGGAAGATGGACGTACTTTGTCTGACTACAA 16862 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||| ||||| |||||||| | ||| | || || || Sbjct 16863 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 16898 >seq517 Length=1171097 Score = 127 bits (140), Expect = 1e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||| ||||| || || ||||||||||| ||||| || || Sbjct 1142414 ATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCG 1142473 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| |||| || ||| || || ||||| | || || ||||| Sbjct 1142474 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 1142533 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| ||||||||||| | ||| ||||| | |||||| Sbjct 1142534 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTAACTACAAC 1142593 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 | ||||| |||||||| | ||| | || || || Sbjct 1142594 TTTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 1142628 >seq26 Length=7528108 Score = 113 bits (124), Expect = 3e-20 Identities = 147/201 (73%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||| | |||||||| ||||| || || ||||||||| | ||||| || | Sbjct 6810585 AATGCAGATATTCATGAAAACCCTAACGGGGAAGACCATCACTCTCAAGGTTGAACCCTC 6810644 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || | |||| |||| || ||| || || ||||| | || || ||||| Sbjct 6810645 GGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCCGATCA 6810704 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACT--TTAGGC-GATTA 23786 ||| | | || ||||| ||||| ||||||||||| | | | ||| || | | || || Sbjct 6810705 GCAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTACTTTGTCTGACTA 6810764 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| ||||| |||||||| Sbjct 6810765 CAACATTCAAAAGGAGTCCAC 6810785 >seq292 Length=3256830 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || ||||| ||||| || || ||| Sbjct 1957967 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1957908 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || ||||| | |||| | || || || || | || || || || Sbjct 1957907 GACACCATTGAGAACGTTAAAGCCAAAA-TCCAAGATAAGGAGGGCATCCCCCCCGACCA 1957849 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| |||||||| |||||||| | |||||| | |||||||| Sbjct 1957848 GCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAAGATGGCCGCACTCTGTCTGATTACAA 1957789 Query 23790 CATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 1957788 TATCCAGAAAGAGTCCAC 1957771 >seq108 Length=4373546 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||| ||||| || || |||||||| || | ||| ||| Sbjct 1070665 AAGATGCAGATTTTTGTGAAAACCCTTACGGGGAAGACCATCACTCTTGAGGCTGAATCC 1070606 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || | || |||| |||| || || || || ||||| | || || || Sbjct 1070605 TCAGATAGAGTAGAAAACGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTAAT 1070546 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | || || || || ||||| ||||||| ||| | ||| ||| | | || ||| Sbjct 1070545 CAGCAGAGATTGATCTTGGCTGGCAAGCAACTGGCAGATGGACGAACTCTGTGGGACTAC 1070486 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 | ||| ||||| ||| |||| | ||| | || || || Sbjct 1070485 AGCATTCAAAAGGAGGCCACTCTTCATCTTGTGTTGAG 1070448 >seq101 Length=4626942 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || ||||| || ||| Sbjct 1982750 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 1982691 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || || || || || | || || || || Sbjct 1982690 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 1982631 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | |||||| | ||||||||| Sbjct 1982630 CAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1982571 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 1982570 ATCCAGAAAGAGTCCAC 1982554 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || || || || ||||| || ||| Sbjct 1982978 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATAACCCTGGAAGTGGAACCCAGC 1982919 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || || || || || | || || || || Sbjct 1982918 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 1982859 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | |||||| | ||||||||| Sbjct 1982858 CAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1982799 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||||||||| Sbjct 1982798 ATCCAAAAAGAGTCCAC 1982782 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| || || || || ||||| || || || || || Sbjct 1983209 AAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAACCC 1983150 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || || || || || || || | || || || Sbjct 1983149 AGTGACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCTGAC 1983090 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||||||||| || |||||||| | |||||| | |||||| Sbjct 1983089 CAGCAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 1983030 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || ||||||||||| Sbjct 1983029 AACATCCAGAAAGAGTCCAC 1983010 >seq1820 Length=90317 Score = 84.2 bits (92), Expect = 1e-11 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| || || || || || || || ||||| || || || || || Sbjct 66752 AAAATGCAGATTTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAGGTGGAACCC 66811 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTA-CCGCCA-G 23725 | ||||| | |||| | || || || || ||||| ||| | ||||| | Sbjct 66812 AGTGACACAATCGAAACTGTGAAGGCCAAGATCCAAGATAAAGA--GTGCATCCGCCCCG 66869 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 | || ||| | | || ||||||||||| || |||||||| | |||||| | |||| Sbjct 66870 ACCAGCAGAGGCTTATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATT 66929 Query 23786 ACAACATACAAAAAGAGTCCAC 23807 ||||| | || |||||||| || Sbjct 66930 ACAACCTCCAGAAAGAGTCGAC 66951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337961859207212