Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq101 150 4e-31 seq1820 149 1e-30 seq26 140 8e-28 seq56 131 4e-25 seq292 122 2e-22 seq15 107 5e-18 seq9 93.3 1e-13 seq2390 86.0 1e-11 seq37 84.2 5e-11 >seq101 Length=4626942 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| || || || ||||| ||||| |||| |||||||| | | ||| | ||||| Sbjct 1982994 CAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1983053 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || || ||||| | || ||||| || || || || ||||| || Sbjct 1983054 TTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 1983113 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||||||| |||||||||||| || |||||| || | ||||| || Sbjct 1983114 TTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGT 1983173 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | ||| | |||||||| Sbjct 1983174 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 1983209 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| || || |||||||| ||||| |||| |||||||| | | ||| | ||||| Sbjct 1982538 CAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1982597 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || || ||||| | || ||||| || || || || ||||| || Sbjct 1982598 TTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 1982657 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| |||||||||||| || |||||| || | ||||| || Sbjct 1982658 CTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGT 1982717 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 1982718 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1982750 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||||||||| || ||||| |||| |||||||| | | ||| | |||||| Sbjct 1982311 AGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1982370 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| || ||||| | || ||||| || || || || ||||| ||| Sbjct 1982371 TCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCT 1982430 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||| || || || || |||| ||||| ||| Sbjct 1982431 TGGATCTTGGCCTTCACATTTTCGATGGTATCACTGGGCTCTACTTCTAGGGTGATGGTC 1982490 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 1982491 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1982522 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| || || || ||||| |||||||||| |||||||| | | ||| | ||||| Sbjct 1982766 CAGGACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1982825 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || || ||||| | || ||||| || || || || ||||| || Sbjct 1982826 TTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 1982885 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| |||||||||||| || |||||| || | || || || Sbjct 1982886 CTGGATCTTGGCCTTCACATTTTCGATGGTGTCGCTGGGTTCCACTTCCAGGGTTATGGT 1982945 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 1982946 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1982978 >seq1820 Length=90317 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||||||||| || ||||| |||| |||||||| | | ||| | |||||| Sbjct 66966 AGTACCAGGTGGAGAGTCGACTCTTTCTGGAGGTTGTAATCAGAAAGAGTGCGGCCATCT 66907 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || |||||||| | || |||||||| | || | || || ||| Sbjct 66906 TCCAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCGGGGCGGATGCACTCTTTATCT 66847 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||||| |||||| ||||| || |||||| || | ||||| ||| Sbjct 66846 TGGATCTTGGCCTTCACAGTTTCGATTGTGTCACTGGGTTCCACCTCCAGGGTGATGGTC 66787 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || | ||| | |||||||| Sbjct 66786 TTGCCAGTCAGTGTCTTCACGAAAATCTGCATTTT 66752 >seq26 Length=7528108 Score = 140 bits (154), Expect = 8e-28 Identities = 167/226 (74%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAA--- 225548 ||||||||||| ||||| || |||||||| || ||||| | ||||| || | ||| Sbjct 6810810 ACGAAGTCTCAACACAAGCTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 6810751 Query 225549 AGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 ||| | |||||||| || ||||| ||||| ||||| || | || || ||||| ||||| Sbjct 6810750 AGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAAT 6810691 Query 225609 ACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 |||||||| || || ||||| ||| ||| ||| || || || |||| ||| || | Sbjct 6810690 TCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTT 6810631 Query 225669 TAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | ||||| ||||| ||||| | ||||| ||||| | |||||| Sbjct 6810630 GAGAGTGATGGTCTTCCCCGTTAGGGTTTTCATGAATATCTGCATT 6810585 >seq56 Length=5723395 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| |||||||| || || |||| |||||| || | || || | ||||||| Sbjct 4239171 AGCACCAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCT 4239230 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| ||||| || ||||| || | || ||||| || || || || || ||||| Sbjct 4239231 TCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 4239290 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || ||||| || | ||||| ||| Sbjct 4239291 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4239350 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | ||||| Sbjct 4239351 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239382 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| |||||||| || || |||| ||||| || | || || | |||||| Sbjct 4238942 CAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 4239001 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| ||||| || ||||| || | || ||||| || || || || || || || Sbjct 4239002 TTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTC 4239061 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| || || ||||||||||| || ||||| || | ||||| || Sbjct 4239062 TTGGATCTTCCCTTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 4239121 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| ||||| || || | ||| | ||||| Sbjct 4239122 CTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239154 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || ||||| || || |||| ||||| || | || || | ||||||| Sbjct 4239399 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4239458 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| ||||| || ||||| || | || ||||| || || || || || ||||| Sbjct 4239459 TCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 4239518 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || ||||| || | ||||| ||| Sbjct 4239519 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4239578 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | ||||| Sbjct 4239579 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239610 Score = 118 bits (130), Expect = 3e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || ||||| || || |||| ||||| || | || || | ||||||| Sbjct 4239627 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4239686 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| ||||| || ||||| || | || ||||| || || || || || ||||| Sbjct 4239687 TCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 4239746 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || ||||| || | ||||| ||| Sbjct 4239747 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4239806 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || || | ||| | |||||| Sbjct 4239807 TTACCGGTCAAGGTCTTCACGAAGATCTGCATT 4239839 >seq292 Length=3256830 Score = 122 bits (134), Expect = 2e-22 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| ||||| |||| ||||||||| | || ||| | |||||| Sbjct 1957756 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGACAGAGTGCGGCCATCT 1957815 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || || || || || || |||||||| || || || ||||| ||| Sbjct 1957816 TCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTATCT 1957875 Query 225622 TGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| |||| | | | || |||||||| || || || || | ||||| || Sbjct 1957876 TGGAT-TTTGGCTTTAACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 1957934 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 1957935 CTTGCCCGTCA 1957945 >seq15 Length=13258014 Score = 107 bits (118), Expect = 5e-18 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || ||| | || ||| ||| |||||||||||||||||||||| Sbjct 1369184 CACTTCAGTACCTGGCTCCTTACTCTGGCTGTTCTATGGGAGAATATTTTAGAGATAATG 1369125 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAACGTATA 5128 | ||||||||||| |||||||| ||||| ||| ||||| |||| | ||| Sbjct 1369124 GCAAACATGCTTTGATCATCTATGATGACTTATCCAAACAGGTCAAAGGATA 1369073 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/126 (78%), Gaps = 5/126 (4%) Strand=Plus/Plus Query 4453 TTAATCAAAAATATTGTGAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATA 4512 ||||||| ||| || |||| || |||||||| || || || |||||||| || || Sbjct 1368732 TTAATCATAAA-AT----AATACCTGTCCATCAGTGATGGAAATGACATTTGTTGGAATG 1368786 Query 4513 TAAGCAGAAACATCACCTGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCA 4572 |||||||| |||||||| ||||||||||| | || ||||| || || | || |||||| Sbjct 1368787 TAAGCAGATACATCACCAGCTTGTGTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCA 1368846 Query 4573 CCAAAA 4578 |||||| Sbjct 1368847 CCAAAA 1368852 >seq9 Length=9398461 Score = 93.3 bits (102), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||| |||| || ||||| |||| ||| ||| | | ||| || || Sbjct 525095 AGAACCAGGTGGGGAGTCGACTCTTTCTGGAAGCTGTGATCAGAAAGAGTGTGGTCACCT 525154 Query 225562 TCTAGCTGCTTCCCAGC-GAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| || | | | || || | |||||||| | || | || || || || Sbjct 525155 TCCAGCTGCTTGCCTGGTGGAAATGAGCCTCTGTTGGTCAGCGGGGCTGCCCTCTTTATC 525214 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||||||| |||||||||||| || ||||| || | ||||| || Sbjct 525215 TTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 525274 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | ||| |||||||| Sbjct 525275 CTTGCCGGTCAGGGTCTTCACGAAGCTCTGCATTTT 525310 >seq2390 Length=15461 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 ||||||||||| |||| | | ||||||||||| ||||| || | ||| || || | Sbjct 8330 TTGGTAAGATTTTTTGGGCTGCATCAAATTAAATAACATAGCTCATCACTTGTATAAGTT 8271 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA 7851 ||||||||| |||||| ||| | |||||| ||| || ||||| |||||||||| Sbjct 8270 CCCGTCAGTTCCTTTGAATTTAATTCTTGCGAATGTACTATTCAGGCGGAATATTTA 8214 >seq37 Length=7442708 Score = 84.2 bits (92), Expect = 5e-11 Identities = 147/211 (70%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||| ||| | | |||| ||| || ||||| | |||| |||| |||||| Sbjct 5921030 AGTCTCAACACA-GACGAAGAGCGGACTCCTTTTGAATGTTGTGGTCGGACAAAGTATGT 5921088 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| || ||||| ||||| ||| | |||| || || || | ||||| |||||| Sbjct 5921089 CCGTCTTCCAGTTGCTTGCCAGCCAAGTTCAGTCTCTGCTGATCACGAGGAATTCCTTCC 5921148 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT--CTGAGGTTTCCACGTCTAACG 225673 ||||| || ||||| ||| ||| || || ||| |||||| ||| || | | Sbjct 5921149 TTGTCCTGAATCTTGGCCTTTACA--TTTTTTGCTGTAGCTGAGGGTTCAACCTTAAGAA 5921206 Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||| ||| ||||| | ||||| ||||| Sbjct 5921207 TGATAATCTCCCCCGTAAGGGTTTTCATGAA 5921237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192354128122766