Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq185 172 4e-38 seq32 105 5e-18 seq170 87.8 1e-12 >seq185 Length=3693041 Score = 172 bits (190), Expect = 4e-38 Identities = 137/165 (83%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||| Sbjct 3389791 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 3389732 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||||||||| ||||||||||| |||||||| || ||||| || | | Sbjct 3389731 ACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 3389672 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | |||||||||||||||||||||||| ||| Sbjct 3389671 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCATCAGA 3389627 >seq32 Length=10841312 Score = 105 bits (116), Expect = 5e-18 Identities = 165/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || ||||||||||||| || | || || | Sbjct 10199710 ATGAGCTCCTTGTGGAGGTTCCTTGAGATCTCTGCTGAGGACTAAATTAATTCTATCCTT 10199769 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || || |||||||| ||||| |||||||| ||||||| || Sbjct 10199770 TAAAGGTCGATTCTTCTCAGGAATAGAGAACCATGTCTTCCTACCCATAATCACCAAATT 10199829 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 114441 ||| |||||| | || || || | ||||| | | || || || || || Sbjct 10199830 CTGTTTACCTTCTACTGAGGAGGTTGTGGTCATTCTTTGGAAAAACTTGAATTCATT--- 10199886 Query 114442 AAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGG 114495 || | ||| |||| ||||| || ||||| || |||||||||||| ||||| Sbjct 10199887 ---CCTGAGCGGGGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG 10199938 >seq170 Length=3340629 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || ||||||||||||| || | || || | | ||||| |||||| || || Sbjct 2842989 TTGAGATCTCTGCTGAGGACTAAATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 2843048 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 || |||||||| ||||| |||||||| ||||||| ||||| |||||| Sbjct 2843049 ATAGAGAACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2843096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406105833128854