Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq61 172 5e-38
seq81 111 1e-19
seq64 93.3 4e-14
seq54 86.0 5e-12
>seq61
Length=5536230
Score = 172 bits (190), Expect = 5e-38
Identities = 569/869 (65%), Gaps = 23/869 (3%)
Strand=Plus/Minus
Query 4273 CTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACG 4332
||| ||| || ||||| ||||| || ||||| | |||||||| |||||||| |||| |
Sbjct 436651 CTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAAGTCAAGTG 436592
Query 4333 GATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAA 4392
|||| | | || || || | | ||| | | | |||||| || | |
Sbjct 436591 GATTTTCTACTCTGGAAACCTTGCGAAAACCTAGCTCCCGCATAAGTCGGTCTGCCATGA 436532
Query 4393 ATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGT 4452
|||| |||||||| | || | ||| ||| | ||||| | ||||||| | || |
Sbjct 436531 ATTCAATATACTGCTTTATTAACATGCAATTA-TCCCAATGAGCTTCACAGGCAAGGCCT 436473
Query 4453 ATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTT 4512
| | | ||| |||| | | | | || || | ||||| || || | | | |
Sbjct 436472 CTCGGAGGAGCTCCTGTTTTGTCCTAATGGTATCGATAATTATTTCCTTCACTCTCCGCT 436413
Query 4513 TAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTT 4572
|| ||||||| || | | | |||| | ||| ||||| ||||| | ||||| |
Sbjct 436412 CTGAAGGTTTATGGACCAGATGTTTGAACATCAGACAGGCAAAGTCACAGCGTAAACCCT 436353
Query 4573 CGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAA 4632
| ||||||||| |||| | |||| ||| | || ||||| | | || | | |
Sbjct 436352 CACCTCTGCTAAGAGGTTCACTGGAAACCGTGAGACCAGGCATCAGGCTGCTATCCTGGA 436293
Query 4633 GCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTA 4692
|||| ||||| || | || |||| |||| || ||||| | ||| ||||| || |
Sbjct 436292 GCCAGAATATCCACACAGAAGAACCAGCAAAGGGGATTCCTTCCATGGCAGCAAAGGCCA 436233
Query 4693 CTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCT 4751
| | || ||| | | |||| ||||||| |||||| || ||||| | ||
Sbjct 436232 CAACCCGTTCCCCATAGGCAGCTT-CTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCC 436174
Query 4752 TTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATTTACTTTTTTCAAAT 4808
| ||||| |||| || || || | || | | | || ||||| ||| || |
Sbjct 436173 TCCTTCTTTCCGCAAGGCATCGTCTGGATGGTGCTGAAGAGTAATTCCCTTGCTT----T 436118
Query 4809 GGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867
|| |||| |||| ||||||| || || || ||||||||||||||||| | ||||| ||
Sbjct 436117 GGCATCTTTAATAGAAGTGTCGATGAGAAGACTATACATTTCAGAATGGTTGTTTTCCAT 436058
Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCT 4927
||| | || || || | || || | ||||||| | | ||||||| | | || ||
Sbjct 436057 GGCAGTTTGGAAGCCATGCAAACAGCGAGCTTCTCTAATCTGAACTTGGCTCCA----CT 436002
Query 4928 -TTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG-- 4984
||| || ||||||| ||||||||||| || | ||| ||||| || |||| ||| ||
Sbjct 436001 GTTCCACCCAGTTTTCATTTACTATACCATCCCCGGCCGCAAAGAAAGCCAGAACGTGGC 435942
Query 4985 AG-ATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTA 5043
|| |||||| | ||| |||||||| || || |||||| | | || || | |
Sbjct 435941 AGTGTATAAAATCGCTTTCCTCAGGCTTCAGGGATTCCCAGTGCTGAATGTCCTTGGAAA 435882
Query 5044 AATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATAT 5103
| | || || ||| | |||| ||| || || || ||||| || |||| ||||| ||
Sbjct 435881 GAGCCACCTC-TCAGCTGTCC-AAAGGAAGCCTCAGCTTTCTTACACATCTGCCAAAGAT 435824
Query 5104 CAGGATACTGAATCG-GAAGTATGACAAA 5131
|| | |||| || | |||| ||||||||
Sbjct 435823 CATGGTACTCCATAGTGAAG-ATGACAAA 435796
>seq81
Length=4962868
Score = 111 bits (122), Expect = 1e-19
Identities = 127/170 (75%), Gaps = 3/170 (2%)
Strand=Plus/Plus
Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825
|| || || ||||| || ||||| | || | ||||| |||| ||| ||| || |||||
Sbjct 2076257 GCCCTTGTGAAAACGGACATTCAGGTAGCTCTTCCTTCTGGGTTCTATGGAAGAGTAGCT 2076316
Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885
|| | ||||| ||||| | |||||||| ||||| || || || || || |||||| |
Sbjct 2076317 CCCCGTTCTGGCTTGGCTGCAAAACACTTCATCGATGTAGGAGCTGGCGTCATAGATGAA 2076376
Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932
|| ||||||||||| || || | || ||||||||||||| ||||||
Sbjct 2076377 GATTATAGAGGAAATGTGGGTGTCGTACTGTTTAATTTTGGCAAAGAAAA 2076426
>seq64
Length=5459255
Score = 93.3 bits (102), Expect = 4e-14
Identities = 99/130 (76%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
|||||||| || || ||||| || || || || ||||||||||||||||| || || |
Sbjct 1605375 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATA 1605319
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
||||| ||||| |||| || || | |||||| || |||||||| || | ||| || |
Sbjct 1605318 TGTGAGAGATAAAATACTTCTCATCTGACTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 1605259
Query 5041 TTAAATCAAC 5050
||| |||||
Sbjct 1605258 ATAAGTCAAC 1605249
Score = 82.4 bits (90), Expect = 7e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318
||| || || | ||||| || || |||||||| ||||| |||||||| ||||| |||||
Sbjct 1627844 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTC 1627785
Query 4319 CATAAAATCAAACGGATT 4336
|||||||||||| |||||
Sbjct 1627784 CATAAAATCAAAGGGATT 1627767
>seq54
Length=5886867
Score = 86.0 bits (94), Expect = 5e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| |||||||| || ||||| || |||||||| | || ||||| | || | || ||
Sbjct 1574945 TCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 1575004
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || ||||||||||| || ||||| ||||| || || ||
Sbjct 1575005 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGGCC 1575064
Query 4692 AC 4693
||
Sbjct 1575065 AC 1575066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426989283114137
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |