Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq61 172 5e-38 seq81 111 1e-19 seq64 93.3 4e-14 seq54 86.0 5e-12 >seq61 Length=5536230 Score = 172 bits (190), Expect = 5e-38 Identities = 569/869 (65%), Gaps = 23/869 (3%) Strand=Plus/Minus Query 4273 CTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACG 4332 ||| ||| || ||||| ||||| || ||||| | |||||||| |||||||| |||| | Sbjct 436651 CTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAAGTCAAGTG 436592 Query 4333 GATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAA 4392 |||| | | || || || | | ||| | | | |||||| || | | Sbjct 436591 GATTTTCTACTCTGGAAACCTTGCGAAAACCTAGCTCCCGCATAAGTCGGTCTGCCATGA 436532 Query 4393 ATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGT 4452 |||| |||||||| | || | ||| ||| | ||||| | ||||||| | || | Sbjct 436531 ATTCAATATACTGCTTTATTAACATGCAATTA-TCCCAATGAGCTTCACAGGCAAGGCCT 436473 Query 4453 ATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTT 4512 | | | ||| |||| | | | | || || | ||||| || || | | | | Sbjct 436472 CTCGGAGGAGCTCCTGTTTTGTCCTAATGGTATCGATAATTATTTCCTTCACTCTCCGCT 436413 Query 4513 TAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTT 4572 || ||||||| || | | | |||| | ||| ||||| ||||| | ||||| | Sbjct 436412 CTGAAGGTTTATGGACCAGATGTTTGAACATCAGACAGGCAAAGTCACAGCGTAAACCCT 436353 Query 4573 CGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAA 4632 | ||||||||| |||| | |||| ||| | || ||||| | | || | | | Sbjct 436352 CACCTCTGCTAAGAGGTTCACTGGAAACCGTGAGACCAGGCATCAGGCTGCTATCCTGGA 436293 Query 4633 GCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTA 4692 |||| ||||| || | || |||| |||| || ||||| | ||| ||||| || | Sbjct 436292 GCCAGAATATCCACACAGAAGAACCAGCAAAGGGGATTCCTTCCATGGCAGCAAAGGCCA 436233 Query 4693 CTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCT 4751 | | || ||| | | |||| ||||||| |||||| || ||||| | || Sbjct 436232 CAACCCGTTCCCCATAGGCAGCTT-CTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCC 436174 Query 4752 TTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATTTACTTTTTTCAAAT 4808 | ||||| |||| || || || | || | | | || ||||| ||| || | Sbjct 436173 TCCTTCTTTCCGCAAGGCATCGTCTGGATGGTGCTGAAGAGTAATTCCCTTGCTT----T 436118 Query 4809 GGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 || |||| |||| ||||||| || || || ||||||||||||||||| | ||||| || Sbjct 436117 GGCATCTTTAATAGAAGTGTCGATGAGAAGACTATACATTTCAGAATGGTTGTTTTCCAT 436058 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCT 4927 ||| | || || || | || || | ||||||| | | ||||||| | | || || Sbjct 436057 GGCAGTTTGGAAGCCATGCAAACAGCGAGCTTCTCTAATCTGAACTTGGCTCCA----CT 436002 Query 4928 -TTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG-- 4984 ||| || ||||||| ||||||||||| || | ||| ||||| || |||| ||| || Sbjct 436001 GTTCCACCCAGTTTTCATTTACTATACCATCCCCGGCCGCAAAGAAAGCCAGAACGTGGC 435942 Query 4985 AG-ATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTA 5043 || |||||| | ||| |||||||| || || |||||| | | || || | | Sbjct 435941 AGTGTATAAAATCGCTTTCCTCAGGCTTCAGGGATTCCCAGTGCTGAATGTCCTTGGAAA 435882 Query 5044 AATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATAT 5103 | | || || ||| | |||| ||| || || || ||||| || |||| ||||| || Sbjct 435881 GAGCCACCTC-TCAGCTGTCC-AAAGGAAGCCTCAGCTTTCTTACACATCTGCCAAAGAT 435824 Query 5104 CAGGATACTGAATCG-GAAGTATGACAAA 5131 || | |||| || | |||| |||||||| Sbjct 435823 CATGGTACTCCATAGTGAAG-ATGACAAA 435796 >seq81 Length=4962868 Score = 111 bits (122), Expect = 1e-19 Identities = 127/170 (75%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825 || || || ||||| || ||||| | || | ||||| |||| ||| ||| || ||||| Sbjct 2076257 GCCCTTGTGAAAACGGACATTCAGGTAGCTCTTCCTTCTGGGTTCTATGGAAGAGTAGCT 2076316 Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885 || | ||||| ||||| | |||||||| ||||| || || || || || |||||| | Sbjct 2076317 CCCCGTTCTGGCTTGGCTGCAAAACACTTCATCGATGTAGGAGCTGGCGTCATAGATGAA 2076376 Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 || ||||||||||| || || | || ||||||||||||| |||||| Sbjct 2076377 GATTATAGAGGAAATGTGGGTGTCGTACTGTTTAATTTTGGCAAAGAAAA 2076426 >seq64 Length=5459255 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/130 (76%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| || || || || ||||||||||||||||| || || | Sbjct 1605375 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATA 1605319 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | |||||| || |||||||| || | ||| || | Sbjct 1605318 TGTGAGAGATAAAATACTTCTCATCTGACTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 1605259 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 1605258 ATAAGTCAAC 1605249 Score = 82.4 bits (90), Expect = 7e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 ||| || || | ||||| || || |||||||| ||||| |||||||| ||||| ||||| Sbjct 1627844 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTC 1627785 Query 4319 CATAAAATCAAACGGATT 4336 |||||||||||| ||||| Sbjct 1627784 CATAAAATCAAAGGGATT 1627767 >seq54 Length=5886867 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||||||| || ||||| || |||||||| | || ||||| | || | || || Sbjct 1574945 TCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 1575004 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| ||||| || || || Sbjct 1575005 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGGCC 1575064 Query 4692 AC 4693 || Sbjct 1575065 AC 1575066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426989283114137