Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq61 210 3e-49
seq86 123 3e-23
seq54 116 5e-21
seq64 93.3 6e-14
>seq61
Length=5536230
Score = 210 bits (232), Expect = 3e-49
Identities = 592/898 (66%), Gaps = 22/898 (2%)
Strand=Plus/Minus
Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894
||||| |||||||| | ||||| | || | | ||||| || || ||||| || |||
Sbjct 436682 GACATCACTCCCATCCTCTGATACACGCCTCCTCTCTTCTCAAAGAAGTTAGTCTTCCCT 436623
Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAAT 47954
|||| ||| ||||| |||||||| |||| |||||| || | | ||| || |||
Sbjct 436622 TCCAGTGAAATATTCTCCATAAAGTCAAGTGGATTTTCTACTCTGGAAACCTTGCGAAAA 436563
Query 47955 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAT--CTTT-TCATCATTTCA 48011
|||| || || |||| ||||| | |||||| ||||| |||| | | |||
Sbjct 436562 CCTAGCTCCCGCATAAGTCGGTCTGCCATGAATTCAATATACTGCTTTATTAACATG--- 436506
Query 48012 CAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTG 48071
||||| || || || || || || || | ||||| || | ||| |||| | |
Sbjct 436505 CAATT-ATCCCAATGAGCTTCACAGGCAAGGCCTCTCGGAGGAGCTCCTGTTTTGTCCTA 436447
Query 48072 ACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTT--GGTGGATACAACAAATGTT 48129
| | ||| | ||||| | || | ||| | || ||| || | || |||||
Sbjct 436446 ATGGTATCGATAATTATTTCCTTCAC--TCTCCGCTCTGAAGGTTTATGGACCAGATGTT 436389
Query 48130 TAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAG 48189
| ||||| | ||| ||||| ||||| | | ||| ||| |||| |||| ||| | |
Sbjct 436388 TGAACATCAGACAGGCAAAGTCACAGCGTAAACCCTCACCTCTGCTAAGAGGTTCACTGG 436329
Query 48190 AAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATC 48249
||| |||||||| ||||| || | | | | |||||| ||||| | | |||| |
Sbjct 436328 AAACCGTGAGACCAGGCATCAGGCTGCTATCCTGGAGCCAGAATATCCACACAGAAGAAC 436269
Query 48250 CAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTT 48309
||| |||| || ||||| | ||| ||||| || || | || || || ||||
Sbjct 436268 CAGCAAAGGGGATTCCTTCCATGGCAGCAAAGGCCACAACCCGTTCCCCATAGGCAGCTT 436209
Query 48310 CGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTT 48366
| |||| ||||| || |||||||| |||| ||||||| | |||||||| || |
Sbjct 436208 CTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTTCCGCAAGGCATCGTCT 436149
Query 48367 CTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAA 48426
|| | | ||||| || | || | ||| |||||||| |||| || || | ||
Sbjct 436148 GGATGGTGCTGAAGAGTAATTCCCTTGCTTTGGCATCTTTAATAGAAGTGTCGATGAGAA 436089
Query 48427 GACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCG 48486
||||||||||||| || || | ||||| || || | || || || | ||||| | |
Sbjct 436088 GACTATACATTTCAGAATGGTTGTTTTCCATGGCAGTTTGGAAGCCATGCAAACAGCGAG 436029
Query 48487 CTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCAT 48546
||||| | ||||| || | | | | |||| || | || ||||||||||| ||||
Sbjct 436028 CTTCTCTAATCTGAACTTGGCTCC---ACTGTTCCACCCAGTTTTCATTTACTATACCAT 435972
Query 48547 CACTAGCAGCAAAAAATGCTAATACATG---TTTAATAAAATATTTTTCGTTGGAAGTCA 48603
| | || ||||| || || | || || | ||||||| |||| | | |||
Sbjct 435971 CCCCGGCCGCAAAGAAAGCCAGAACGTGGCAGTGTATAAAATCGCTTTCCTCAGGCTTCA 435912
Query 48604 GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATG 48663
| | ||||| | || || || || | | | || || |||||||||| ||| || |
Sbjct 435911 GGGATTCCCAGTGCTGAATGTCCTTGGAAAGAGCCACCTC-TCAGCTGTCC-AAAGGAAG 435854
Query 48664 CCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721
|||| ||||| ||| |||| | ||| | |||| ||| | || | ||| || |||||
Sbjct 435853 CCTCAGCTTTCTTACACATCTGCCAAAGATCATGGTACTCCATAGTGAAGATGACAAA 435796
>seq86
Length=5199016
Score = 123 bits (136), Expect = 3e-23
Identities = 107/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | ||
Sbjct 122616 TGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 122675
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| ||||||| ||| |||||||| |||||||| ||||| || || | | ||||||
Sbjct 122676 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 122735
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 122736 TTTCTTATACCAT 122748
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || ||||| ||||| |||||||| || |||||||| || |||
Sbjct 139174 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 139233
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
|||||||||||||| | || || || || ||||| || || | || | |||||||
Sbjct 139234 TATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATCCCCACAGACACCCTCATCAAC 139293
Query 78519 ATATGCTGAGGTCTTTC 78535
||||| || ||||||||
Sbjct 139294 ATATGTTGTGGTCTTTC 139310
Score = 102 bits (112), Expect = 1e-16
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||||||||| |||||||| || ||||| || |||| || || || | || | |||
Sbjct 131550 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 131609
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
||||| |||||||| ||||| || | ||| |||||||| | ||| || ||||||| ||
Sbjct 131610 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 131669
Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151
|| || || || || | | ||||||||
Sbjct 131670 TCCAGGTAAATAGCAAATGCCCCAGGTCG 131698
Score = 86.0 bits (94), Expect = 9e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974
||||||| |||||||| ||||||||||| ||||||| ||||| ||||||||||| ||
Sbjct 131096 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACA 131155
Query 77975 CATCAATGACCAGTC 77989
|||||| ||||| ||
Sbjct 131156 CATCAAAGACCAATC 131170
>seq54
Length=5886867
Score = 116 bits (128), Expect = 5e-21
Identities = 97/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| || || | ||| || ||||| ||||| || ||||| || |||||||| |||
Sbjct 1574945 TCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 1575004
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||| ||||||| ||| ||||| ||||||||||| || ||||| ||||| || || ||
Sbjct 1575005 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGGC 1575063
Score = 104 bits (114), Expect = 3e-17
Identities = 106/138 (77%), Gaps = 3/138 (2%)
Strand=Plus/Plus
Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851
||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| |
Sbjct 1573464 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTGGACATCACTCCCATCCT 1573523
Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911
||||| || || || || ||||| || || ||||| || ||||||| ||| ||||| ||
Sbjct 1573524 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 1573583
Query 47912 CATAAAATCAAATGGATT 47929
|||||| |||||||||||
Sbjct 1573584 CATAAAGTCAAATGGATT 1573601
>seq64
Length=5459255
Score = 93.3 bits (102), Expect = 6e-14
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697
||| ||||| |||||||| || ||||||| ||| | ||||||||| ||||| ||||||
Sbjct 1601681 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 1601622
Query 48698 GTATTGGATTGGGAAAATAACAAATC 48723
|||||||||||| || || |||||||
Sbjct 1601621 GTATTGGATTGGAAAGATGACAAATC 1601596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694568168540960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |