Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq61 210 3e-49 seq86 123 3e-23 seq54 116 5e-21 seq64 93.3 6e-14 >seq61 Length=5536230 Score = 210 bits (232), Expect = 3e-49 Identities = 592/898 (66%), Gaps = 22/898 (2%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||| | || | | ||||| || || ||||| || ||| Sbjct 436682 GACATCACTCCCATCCTCTGATACACGCCTCCTCTCTTCTCAAAGAAGTTAGTCTTCCCT 436623 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAAT 47954 |||| ||| ||||| |||||||| |||| |||||| || | | ||| || ||| Sbjct 436622 TCCAGTGAAATATTCTCCATAAAGTCAAGTGGATTTTCTACTCTGGAAACCTTGCGAAAA 436563 Query 47955 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAT--CTTT-TCATCATTTCA 48011 |||| || || |||| ||||| | |||||| ||||| |||| | | ||| Sbjct 436562 CCTAGCTCCCGCATAAGTCGGTCTGCCATGAATTCAATATACTGCTTTATTAACATG--- 436506 Query 48012 CAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTG 48071 ||||| || || || || || || || | ||||| || | ||| |||| | | Sbjct 436505 CAATT-ATCCCAATGAGCTTCACAGGCAAGGCCTCTCGGAGGAGCTCCTGTTTTGTCCTA 436447 Query 48072 ACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTT--GGTGGATACAACAAATGTT 48129 | | ||| | ||||| | || | ||| | || ||| || | || ||||| Sbjct 436446 ATGGTATCGATAATTATTTCCTTCAC--TCTCCGCTCTGAAGGTTTATGGACCAGATGTT 436389 Query 48130 TAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAG 48189 | ||||| | ||| ||||| ||||| | | ||| ||| |||| |||| ||| | | Sbjct 436388 TGAACATCAGACAGGCAAAGTCACAGCGTAAACCCTCACCTCTGCTAAGAGGTTCACTGG 436329 Query 48190 AAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATC 48249 ||| |||||||| ||||| || | | | | |||||| ||||| | | |||| | Sbjct 436328 AAACCGTGAGACCAGGCATCAGGCTGCTATCCTGGAGCCAGAATATCCACACAGAAGAAC 436269 Query 48250 CAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTT 48309 ||| |||| || ||||| | ||| ||||| || || | || || || |||| Sbjct 436268 CAGCAAAGGGGATTCCTTCCATGGCAGCAAAGGCCACAACCCGTTCCCCATAGGCAGCTT 436209 Query 48310 CGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTT 48366 | |||| ||||| || |||||||| |||| ||||||| | |||||||| || | Sbjct 436208 CTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTTCCGCAAGGCATCGTCT 436149 Query 48367 CTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAA 48426 || | | ||||| || | || | ||| |||||||| |||| || || | || Sbjct 436148 GGATGGTGCTGAAGAGTAATTCCCTTGCTTTGGCATCTTTAATAGAAGTGTCGATGAGAA 436089 Query 48427 GACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCG 48486 ||||||||||||| || || | ||||| || || | || || || | ||||| | | Sbjct 436088 GACTATACATTTCAGAATGGTTGTTTTCCATGGCAGTTTGGAAGCCATGCAAACAGCGAG 436029 Query 48487 CTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCAT 48546 ||||| | ||||| || | | | | |||| || | || ||||||||||| |||| Sbjct 436028 CTTCTCTAATCTGAACTTGGCTCC---ACTGTTCCACCCAGTTTTCATTTACTATACCAT 435972 Query 48547 CACTAGCAGCAAAAAATGCTAATACATG---TTTAATAAAATATTTTTCGTTGGAAGTCA 48603 | | || ||||| || || | || || | ||||||| |||| | | ||| Sbjct 435971 CCCCGGCCGCAAAGAAAGCCAGAACGTGGCAGTGTATAAAATCGCTTTCCTCAGGCTTCA 435912 Query 48604 GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATG 48663 | | ||||| | || || || || | | | || || |||||||||| ||| || | Sbjct 435911 GGGATTCCCAGTGCTGAATGTCCTTGGAAAGAGCCACCTC-TCAGCTGTCC-AAAGGAAG 435854 Query 48664 CCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 |||| ||||| ||| |||| | ||| | |||| ||| | || | ||| || ||||| Sbjct 435853 CCTCAGCTTTCTTACACATCTGCCAAAGATCATGGTACTCCATAGTGAAGATGACAAA 435796 >seq86 Length=5199016 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | || Sbjct 122616 TGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 122675 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 122676 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 122735 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 122736 TTTCTTATACCAT 122748 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 139174 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 139233 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || || || || ||||| || || | || | ||||||| Sbjct 139234 TATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATCCCCACAGACACCCTCATCAAC 139293 Query 78519 ATATGCTGAGGTCTTTC 78535 ||||| || |||||||| Sbjct 139294 ATATGTTGTGGTCTTTC 139310 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || || | || | ||| Sbjct 131550 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 131609 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| |||||||| | ||| || ||||||| || Sbjct 131610 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 131669 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | | |||||||| Sbjct 131670 TCCAGGTAAATAGCAAATGCCCCAGGTCG 131698 Score = 86.0 bits (94), Expect = 9e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||||||| |||||||| ||||||||||| ||||||| ||||| ||||||||||| || Sbjct 131096 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACA 131155 Query 77975 CATCAATGACCAGTC 77989 |||||| ||||| || Sbjct 131156 CATCAAAGACCAATC 131170 >seq54 Length=5886867 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| || ||||| ||||| || ||||| || |||||||| ||| Sbjct 1574945 TCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 1575004 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||||| ||| ||||| ||||||||||| || ||||| ||||| || || || Sbjct 1575005 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGGC 1575063 Score = 104 bits (114), Expect = 3e-17 Identities = 106/138 (77%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| | Sbjct 1573464 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTGGACATCACTCCCATCCT 1573523 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || || ||||| || || ||||| || ||||||| ||| ||||| || Sbjct 1573524 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 1573583 Query 47912 CATAAAATCAAATGGATT 47929 |||||| ||||||||||| Sbjct 1573584 CATAAAGTCAAATGGATT 1573601 >seq64 Length=5459255 Score = 93.3 bits (102), Expect = 6e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| ||||| |||||||| || ||||||| ||| | ||||||||| ||||| |||||| Sbjct 1601681 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 1601622 Query 48698 GTATTGGATTGGGAAAATAACAAATC 48723 |||||||||||| || || ||||||| Sbjct 1601621 GTATTGGATTGGAAAGATGACAAATC 1601596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694568168540960