Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq61 194 2e-44
seq86 127 3e-24
seq54 116 5e-21
seq64 111 2e-19
>seq61
Length=5536230
Score = 194 bits (214), Expect = 2e-44
Identities = 585/895 (65%), Gaps = 14/895 (2%)
Strand=Plus/Minus
Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382
|||||| |||||||| | || || | ||| | | ||||| || || ||||| || ||
Sbjct 436683 TGACATCACTCCCATCCTCTGATACACGCCTCCTCTCTTCTCAAAGAAGTTAGTCTTCCC 436624
Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAA 46442
||||| ||| ||||| |||||||| |||| ||||| || | ||| || |||
Sbjct 436623 TTCCAGTGAAATATTCTCCATAAAGTCAAGTGGATTTTCTACTCTGGAAACCTTGCGAAA 436564
Query 46443 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACA 46502
|||| || || |||| ||||| | |||||| |||||| || || | ||
Sbjct 436563 ACCTAGCTCCCGCATAAGTCGGTCTGCCATGAATTCAATATACTGCTTTATTAACATGCA 436504
Query 46503 ATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGAC 46562
||| || || ||||| || || || | ||||| || | ||| |||| | | |
Sbjct 436503 ATT-ATCCCAATGAGCTTCACAGGCAAGGCCTCTCGGAGGAGCTCCTGTTTTGTCCTAAT 436445
Query 46563 AGCATCCGATA-TTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAA 46621
| ||| |||| |||| | ||| | ||| ||| ||| | || |||||| |
Sbjct 436444 GGTATC-GATAATTATTTCCTTCACTCTCCGCTCTGAAGGTTTATGGACCAGATGTTTGA 436386
Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681
|||| | ||| ||||| ||||| | | || ||| |||| |||| ||| | ||||
Sbjct 436385 ACATCAGACAGGCAAAGTCACAGCGTAAACCCTCACCTCTGCTAAGAGGTTCACTGGAAA 436326
Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741
||||| |||||||| || | | | | |||||| ||||| | | |||| ||||
Sbjct 436325 CCGTGAGACCAGGCATCAGGCTGCTATCCTGGAGCCAGAATATCCACACAGAAGAACCAG 436266
Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT 46801
|||| || ||||| | || || || || |||| | || || || || || |
Sbjct 436265 CAAAGGGGATTCCTTCCATGGCAGCAAAGGCCACAACCCGTTCCCCATAGGCAGCTTCTT 436206
Query 46802 TATG---AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTA 46858
| | |||||| | |||||||| |||| |||||| | |||||||| || | |
Sbjct 436205 TGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTTCCGCAAGGCATCGTCTGGA 436146
Query 46859 TAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGAC 46918
| | | ||||| || | || | | |||||||| | | || || || | |||||
Sbjct 436145 TGGTGCTGAAGAGTAATTCCCTTGCTTTGGCATCTTTAATAGAAGTGTCGATGAGAAGAC 436086
Query 46919 TATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 46978
|||||||||| ||||| ||||||| || || | || || || | ||||| | ||||
Sbjct 436085 TATACATTTCAGAATGGTTGTTTTCCATGGCAGTTTGGAAGCCATGCAAACAGCGAGCTT 436026
Query 46979 CAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCAC 47038
| ||||||| || | | | | |||| | | || ||||| ||||| ||||| |
Sbjct 436025 CTCTAATCTGAACTTGGCTCC---ACTGTTCCACCCAGTTTTCATTTACTATACCATCCC 435969
Query 47039 TAGCAGCAAAAAATGCCAATACATG---TTTAATAAAATATTTTTCATCGGTAGTCAGTT 47095
|| ||||| || |||| || || | ||||||| |||| || | ||||
Sbjct 435968 CGGCCGCAAAGAAAGCCAGAACGTGGCAGTGTATAAAATCGCTTTCCTCAGGCTTCAGGG 435909
Query 47096 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCT 47155
| ||||| | || || || || | | | || || ||||||||||| || || ||||
Sbjct 435908 ATTCCCAGTGCTGAATGTCCTTGGAAAGAGCCACCTC-TCAGCTGTCCA-AAGGAAGCCT 435851
Query 47156 CTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210
| ||||| ||| |||| | ||| | |||| | || | || | || || |||||
Sbjct 435850 CAGCTTTCTTACACATCTGCCAAAGATCATGGTACTCCATAGTGAAGATGACAAA 435796
>seq86
Length=5199016
Score = 127 bits (140), Expect = 3e-24
Identities = 108/133 (81%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | ||
Sbjct 122616 TGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 122675
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| ||||||| ||| ||||||||||||||||| ||||| || || | | ||||||
Sbjct 122676 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 122735
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 122736 TTTCTTATACCAT 122748
Score = 105 bits (116), Expect = 1e-17
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || ||||| || | || ||||| ||||| || ||||| || |||||||| || |||
Sbjct 139174 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 139233
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
|||||||||||| | || || ||||| || ||||| || |||| || | |||||||
Sbjct 139234 TATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATCCCCACAGACACCCTCATCAAC 139293
Query 77114 ATATGCTGAGGTCGTTCT 77131
||||| || |||| ||||
Sbjct 139294 ATATGTTGTGGTCTTTCT 139311
Score = 96.9 bits (106), Expect = 5e-15
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 77337 CGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAA 77396
|||| || | ||| |||||||| ||||| | || || ||||| || || || || || |
Sbjct 144146 CGCTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCAATCCTTGCTGCCAGGA 144205
Query 77397 TTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTA 77456
| ||||||||||| || | || || |||| || || | || || || |||||||| |
Sbjct 144206 TGGCATAGTCAGGGTGCTTAGTTGTCAAGGTCGCAGCCGTCTCAGCAGCCAAAGTATCCA 144265
Query 77457 ATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504
||| | ||| ||||| || | |||| || || || ||||||||||
Sbjct 144266 GTTCCACAGTGGTAACCCCACTGTATAAGCCCTGGATTACTTTCATGG 144313
Score = 91.5 bits (100), Expect = 2e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 75992 TCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCT 76051
|| || || || || || || || |||||||| ||||| || |||| |||||| ||
Sbjct 127028 TCACAGCTGGCTTCCAAGGCTCCATAATAAATGGTTTCAAAGATCTGCTTATTCAGTAGC 127087
Query 76052 TGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGA 76111
|| ||||| |||| ||||||||||| | || ||||| |||||||| || || ||
Sbjct 127088 TGGGCTTCTGGACTCTCAAAAGGATACCTCATCAGTATAAAAGCATCTGCCAGACCTTGT 127147
Query 76112 ACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146
|| ||||| ||||| || | ||| | ||||| ||
Sbjct 127148 ACCCCAATTCCAATGGGACGATGGCGTTTATTTGA 127182
Score = 91.5 bits (100), Expect = 2e-13
Identities = 59/65 (91%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579
|||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||| |||
Sbjct 131106 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACACATCAAAGAC 131165
Query 76580 CACTC 76584
|| ||
Sbjct 131166 CAATC 131170
>seq54
Length=5886867
Score = 116 bits (128), Expect = 5e-21
Identities = 100/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| || || | ||| || ||||| ||||| |||||||| || ||||| || |||
Sbjct 1574945 TCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 1575004
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||| ||||| | ||| ||||| ||||||||||| || ||||| || || ||||| ||
Sbjct 1575005 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGGCC 1575064
Query 46774 ACAA 46777
||||
Sbjct 1575065 ACAA 1575068
>seq64
Length=5459255
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||||||||| || || | ||| || ||||| ||||| |||||||| || || | || |
Sbjct 1613573 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATGAGACCTCTTTTCT 1613514
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || |
Sbjct 1613513 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 1613454
Query 46772 CGACAAGTCTCTCTCC 46787
| || | ||| || ||
Sbjct 1613453 CCACCACTCTTTCCCC 1613438
Score = 93.3 bits (102), Expect = 6e-14
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186
||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| |||||| |
Sbjct 1601681 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 1601622
Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212
|||||||| ||||| || |||||||
Sbjct 1601621 GTATTGGATTGGAAAGATGACAAATC 1601596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712831122540480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |