Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq61 194 2e-44 seq86 127 3e-24 seq54 116 5e-21 seq64 111 2e-19 >seq61 Length=5536230 Score = 194 bits (214), Expect = 2e-44 Identities = 585/895 (65%), Gaps = 14/895 (2%) Strand=Plus/Minus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| |||||||| | || || | ||| | | ||||| || || ||||| || || Sbjct 436683 TGACATCACTCCCATCCTCTGATACACGCCTCCTCTCTTCTCAAAGAAGTTAGTCTTCCC 436624 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAA 46442 ||||| ||| ||||| |||||||| |||| ||||| || | ||| || ||| Sbjct 436623 TTCCAGTGAAATATTCTCCATAAAGTCAAGTGGATTTTCTACTCTGGAAACCTTGCGAAA 436564 Query 46443 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACA 46502 |||| || || |||| ||||| | |||||| |||||| || || | || Sbjct 436563 ACCTAGCTCCCGCATAAGTCGGTCTGCCATGAATTCAATATACTGCTTTATTAACATGCA 436504 Query 46503 ATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGAC 46562 ||| || || ||||| || || || | ||||| || | ||| |||| | | | Sbjct 436503 ATT-ATCCCAATGAGCTTCACAGGCAAGGCCTCTCGGAGGAGCTCCTGTTTTGTCCTAAT 436445 Query 46563 AGCATCCGATA-TTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAA 46621 | ||| |||| |||| | ||| | ||| ||| ||| | || |||||| | Sbjct 436444 GGTATC-GATAATTATTTCCTTCACTCTCCGCTCTGAAGGTTTATGGACCAGATGTTTGA 436386 Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 |||| | ||| ||||| ||||| | | || ||| |||| |||| ||| | |||| Sbjct 436385 ACATCAGACAGGCAAAGTCACAGCGTAAACCCTCACCTCTGCTAAGAGGTTCACTGGAAA 436326 Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 ||||| |||||||| || | | | | |||||| ||||| | | |||| |||| Sbjct 436325 CCGTGAGACCAGGCATCAGGCTGCTATCCTGGAGCCAGAATATCCACACAGAAGAACCAG 436266 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT 46801 |||| || ||||| | || || || || |||| | || || || || || | Sbjct 436265 CAAAGGGGATTCCTTCCATGGCAGCAAAGGCCACAACCCGTTCCCCATAGGCAGCTTCTT 436206 Query 46802 TATG---AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTA 46858 | | |||||| | |||||||| |||| |||||| | |||||||| || | | Sbjct 436205 TGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTTCCGCAAGGCATCGTCTGGA 436146 Query 46859 TAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGAC 46918 | | | ||||| || | || | | |||||||| | | || || || | ||||| Sbjct 436145 TGGTGCTGAAGAGTAATTCCCTTGCTTTGGCATCTTTAATAGAAGTGTCGATGAGAAGAC 436086 Query 46919 TATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 46978 |||||||||| ||||| ||||||| || || | || || || | ||||| | |||| Sbjct 436085 TATACATTTCAGAATGGTTGTTTTCCATGGCAGTTTGGAAGCCATGCAAACAGCGAGCTT 436026 Query 46979 CAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCAC 47038 | ||||||| || | | | | |||| | | || ||||| ||||| ||||| | Sbjct 436025 CTCTAATCTGAACTTGGCTCC---ACTGTTCCACCCAGTTTTCATTTACTATACCATCCC 435969 Query 47039 TAGCAGCAAAAAATGCCAATACATG---TTTAATAAAATATTTTTCATCGGTAGTCAGTT 47095 || ||||| || |||| || || | ||||||| |||| || | |||| Sbjct 435968 CGGCCGCAAAGAAAGCCAGAACGTGGCAGTGTATAAAATCGCTTTCCTCAGGCTTCAGGG 435909 Query 47096 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCT 47155 | ||||| | || || || || | | | || || ||||||||||| || || |||| Sbjct 435908 ATTCCCAGTGCTGAATGTCCTTGGAAAGAGCCACCTC-TCAGCTGTCCA-AAGGAAGCCT 435851 Query 47156 CTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 | ||||| ||| |||| | ||| | |||| | || | || | || || ||||| Sbjct 435850 CAGCTTTCTTACACATCTGCCAAAGATCATGGTACTCCATAGTGAAGATGACAAA 435796 >seq86 Length=5199016 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | || Sbjct 122616 TGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 122675 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||| ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 122676 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 122735 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 122736 TTTCTTATACCAT 122748 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| ||||| || ||||| || |||||||| || ||| Sbjct 139174 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 139233 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||||||||| | || || ||||| || ||||| || |||| || | ||||||| Sbjct 139234 TATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATCCCCACAGACACCCTCATCAAC 139293 Query 77114 ATATGCTGAGGTCGTTCT 77131 ||||| || |||| |||| Sbjct 139294 ATATGTTGTGGTCTTTCT 139311 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 77337 CGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAA 77396 |||| || | ||| |||||||| ||||| | || || ||||| || || || || || | Sbjct 144146 CGCTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCAATCCTTGCTGCCAGGA 144205 Query 77397 TTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTA 77456 | ||||||||||| || | || || |||| || || | || || || |||||||| | Sbjct 144206 TGGCATAGTCAGGGTGCTTAGTTGTCAAGGTCGCAGCCGTCTCAGCAGCCAAAGTATCCA 144265 Query 77457 ATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 ||| | ||| ||||| || | |||| || || || |||||||||| Sbjct 144266 GTTCCACAGTGGTAACCCCACTGTATAAGCCCTGGATTACTTTCATGG 144313 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 75992 TCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCT 76051 || || || || || || || || |||||||| ||||| || |||| |||||| || Sbjct 127028 TCACAGCTGGCTTCCAAGGCTCCATAATAAATGGTTTCAAAGATCTGCTTATTCAGTAGC 127087 Query 76052 TGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGA 76111 || ||||| |||| ||||||||||| | || ||||| |||||||| || || || Sbjct 127088 TGGGCTTCTGGACTCTCAAAAGGATACCTCATCAGTATAAAAGCATCTGCCAGACCTTGT 127147 Query 76112 ACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146 || ||||| ||||| || | ||| | ||||| || Sbjct 127148 ACCCCAATTCCAATGGGACGATGGCGTTTATTTGA 127182 Score = 91.5 bits (100), Expect = 2e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||| ||| Sbjct 131106 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACACATCAAAGAC 131165 Query 76580 CACTC 76584 || || Sbjct 131166 CAATC 131170 >seq54 Length=5886867 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| || ||||| ||||| |||||||| || ||||| || ||| Sbjct 1574945 TCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 1575004 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | ||| ||||| ||||||||||| || ||||| || || ||||| || Sbjct 1575005 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGGCC 1575064 Query 46774 ACAA 46777 |||| Sbjct 1575065 ACAA 1575068 >seq64 Length=5459255 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| |||||||| || || | || | Sbjct 1613573 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATGAGACCTCTTTTCT 1613514 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 1613513 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 1613454 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 1613453 CCACCACTCTTTCCCC 1613438 Score = 93.3 bits (102), Expect = 6e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| |||||| | Sbjct 1601681 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 1601622 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 |||||||| ||||| || ||||||| Sbjct 1601621 GTATTGGATTGGAAAGATGACAAATC 1601596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712831122540480