Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq101 132 1e-25 seq56 132 1e-25 seq694 125 2e-23 seq695 118 2e-21 seq517 116 9e-21 seq1820 113 1e-19 seq26 105 2e-17 seq108 96.9 8e-15 >seq101 Length=4626942 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| ||||| |||||||| |||||||||||||| | | ||| | |||||| Sbjct 1982539 AGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1982598 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| || ||||||||||||||||| | | ||| || ||||| || Sbjct 1982599 TCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 1982658 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| | || | | |||| ||| || ||||| || || || Sbjct 1982659 TGGATCTTGGCCTTCACATTTTCGATGGTGTC---ACTGGGTTCCACTTCCAGGGTGATG 1982715 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||||||||||| |||||| Sbjct 1982716 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1982750 Score = 132 bits (146), Expect = 1e-25 Identities = 161/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || |||||||| |||||||||||||| | | ||| | |||||| Sbjct 1982995 AGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1983054 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| || ||||||||||||||||| | | ||| || ||||| ||| Sbjct 1983055 TCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCT 1983114 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| | || | | |||| ||| || || || || || || Sbjct 1983115 TGGATCTTGGCCTTCACATTTTCGATGGTGTC---ACTGGGTTCCACCTCCAGGGTGATG 1983171 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || ||||||||||||| ||||||||| Sbjct 1983172 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 1983209 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || ||||||||||||||||||||||| | | ||| | |||||| Sbjct 1982767 AGGACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1982826 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| || ||||||||||||||||| | | ||| || ||||| || Sbjct 1982827 TCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 1982886 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| | || | | |||| || ||||| || || || || Sbjct 1982887 TGGATCTTGGCCTTCACATTTTCGATGGTGTCGCTGGGTTCCACTTCCAGGGTTATGGTC 1982946 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||||||||||| |||||| Sbjct 1982947 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1982978 Score = 127 bits (140), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || ||||| |||||||| |||||||||||||| | | ||| | |||||| Sbjct 1982311 AGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1982370 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || ||||||||||||||||| | | ||| || ||||| ||| Sbjct 1982371 TCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCT 1982430 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| | || | | | || ||| ||||||||| || || || Sbjct 1982431 TGGATCTTGGCCTTCACATTTTCGATGGTATC---ACTGGGCTCTACTTCTAGGGTGATG 1982487 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||||||||||| |||||| Sbjct 1982488 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1982522 >seq56 Length=5723395 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| ||||| || ||||||||||| || | | || | ||||||| Sbjct 4238943 AGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4239002 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||| || ||||| |||||||||||||| | | ||| || || |||||| Sbjct 4239003 TCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCT 4239062 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || || || || Sbjct 4239063 TGGATCTTCCCTTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 4239119 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | ||||||||||||| |||||| Sbjct 4239120 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239154 Score = 116 bits (128), Expect = 9e-21 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || || || ||||| ||||| || ||||| ||||| || | | || Sbjct 4239162 CTGAGGCGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGACAGGGTG 4239221 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || |||||| || ||||| |||||||||||||| | | ||| || Sbjct 4239222 CGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCC 4239281 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || || || || || ||||| |||| | | |||| ||| ||| || || Sbjct 4239282 TCTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 4239338 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || | ||||||||||||| |||||| Sbjct 4239339 AGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239382 Score = 116 bits (128), Expect = 9e-21 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || || || || || ||||| || ||||||||||| || | | || Sbjct 4239390 CTGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 4239449 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || |||||| || ||||| |||||||||||||| | | ||| || Sbjct 4239450 CGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCC 4239509 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || || || || || ||||| |||| | | |||| ||| ||| || || Sbjct 4239510 TCTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 4239566 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || | ||||||||||||| |||||| Sbjct 4239567 AGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239610 Score = 114 bits (126), Expect = 3e-20 Identities = 161/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || || || || || ||||| || ||||||||||| || | | || Sbjct 4239618 CTGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 4239677 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || |||||| || ||||| |||||||||||||| | | ||| || Sbjct 4239678 CGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCC 4239737 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || || || || || ||||| |||| | | |||| ||| ||| || || Sbjct 4239738 TCTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 4239794 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || || | ||||||||||||| ||||||| Sbjct 4239795 AGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 4239839 >seq694 Length=814564 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | |||||||||||||| |||| ||||| |||||||| || | ||||| | Sbjct 212161 GAGTCTCAACACAAGATGAAGAGTGGACTACTTTTGAATGTTGTAGTCAGACAAAGTACG 212220 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || || ||||| || |||||||| || | | |||||||| Sbjct 212221 TCCATCTTCCAGTTGCTTGCCAGCAAAGATTAGTCTCTGCTGATCAGGAGGAATTCCTTC 212280 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || || ||| | |||| | || || || || |||||||| Sbjct 212281 CTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGT 212340 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || |||||||| | |||||| Sbjct 212341 GATGGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 212379 >seq695 Length=815165 Score = 118 bits (130), Expect = 2e-21 Identities = 159/220 (72%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | |||||||||||||| ||||| ||||| |||||||| || | ||||| | Sbjct 16902 GAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACG 16843 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || || ||||| || |||||||| || | | |||||||| Sbjct 16842 TCCATCTTCCAGTGGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 16783 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || || ||| | |||| | || || || || || ||||| Sbjct 16782 CTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGT 16723 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTC-ACGAAGACCTGCAT 152104 || || || ||||| || || ||| ||||| | |||||| Sbjct 16722 GATGGTCTTCCCCGTTAGGGTTTTCAACGAAAATCTGCAT 16683 >seq517 Length=1171097 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | |||||||||||||| ||||| ||||| | |||||| | | ||||| | Sbjct 1142632 GAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAAAGTTGTAGTTAGACAAAGTACG 1142573 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || || ||||| || |||||||| || | | |||||||| Sbjct 1142572 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 1142513 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || || ||| | |||| | || || || || || ||||| Sbjct 1142512 CTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGT 1142453 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || |||||||| | |||||| Sbjct 1142452 GATGGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 1142414 >seq1820 Length=90317 Score = 113 bits (124), Expect = 1e-19 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 || ||| || || || ||||| |||||||| |||| ||||||||| | | ||| | || Sbjct 66970 TCAGAGTACCAGGTGGAGAGTCGACTCTTTCTGGAGGTTGTAATCAGAAAGAGTGCGGCC 66911 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| || || ||||| |||||||||||||||||||| | ||| | || || Sbjct 66910 ATCTTCCAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCGGGGCGGATGCACTCTTT 66851 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGT 152065 ||||| || || || ||||| || | |||| ||| || || || || || Sbjct 66850 ATCTTGGATCTTGGCCTTCACAGTTTCGATTGTGTC---ACTGGGTTCCACCTCCAGGGT 66794 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| || || ||||||||||| | ||||||||| Sbjct 66793 GATGGTCTTGCCAGTCAGTGTCTTCACGAAAATCTGCATTTT 66752 >seq26 Length=7528108 Score = 105 bits (116), Expect = 2e-17 Identities = 157/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | ||||| |||||||| ||||| ||||| |||||||| || | ||||| | Sbjct 6810806 AGTCTCAACACAAGCTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAGTA 6810747 Query 151947 C---CATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||| || || || || ||||| ||||||||||| || | | |||||| Sbjct 6810746 CATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATTCCT 6810687 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| || || ||| | |||| | || || || || | ||| Sbjct 6810686 TCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGA 6810627 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || ||||| || || |||| ||| | ||||||| Sbjct 6810626 GTGATGGTCTTCCCCGTTAGGGTTTTCATGAATATCTGCATT 6810585 >seq108 Length=4373546 Score = 96.9 bits (106), Expect = 8e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | |||||||||||||| | ||| ||||| ||| |||| || | ||||| Sbjct 1070445 AGTCTCAACACAAGATGAAGAGTGGCCTCCTTTTGAATGCTGTAGTCCCACAGAGTTCGT 1070504 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||| | || || || || ||||| | |||||||| | | | ||||||||| Sbjct 1070505 CCATCTGCCAGTTGCTTGCCAGCCAAGATCAATCTCTGCTGATTAGGAGGAATTCCTTCC 1070564 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || || | ||||| || ||||| || | |||||||| Sbjct 1070565 TTATCCTGGATCTTGGCCTTTACGTTTTCTACTCTATCTGAGGATTCAGCCTCAAGAGTG 1070624 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| || || ||||| || | |||||| || Sbjct 1070625 ATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCATCTT 1070665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153649476000219