Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1646 89.7 5e-13 seq501 89.7 5e-13 seq730 86.0 7e-12 seq15 82.4 8e-11 >seq1646 Length=128628 Score = 89.7 bits (98), Expect = 5e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| |||||| || ||||||||||||||||| ||||||| |||| |||||||| Sbjct 68574 CTCCTGGGCTCAAGCAATCCTCCTGCCTCAGCCTCCTGAGTAGCGGGGACTACAGGCACG 68515 Query 8465 AGCCACCACGCCAAGCT 8481 ||||||||||| |||| Sbjct 68514 CGCCACCACGCCCAGCT 68498 >seq501 Length=1205937 Score = 89.7 bits (98), Expect = 5e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| |||||| || ||||||||||||||||| |||||||||||| |||||| Sbjct 1030841 CTCCTGGGCTCAAGCGATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCG 1030900 Query 8465 AGCCACCACGCCAAGCTAATTTTT 8488 |||||| |||| |||| |||||| Sbjct 1030901 CGCCACCGCGCCCAGCTTATTTTT 1030924 >seq730 Length=768310 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 ||||||||| |||| | ||||| |||||||| ||||||||| ||||||| |||||| Sbjct 214547 GAACTCCTGGGCTCAAGCGATCCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGT 214606 Query 8597 ATGAGCCACCGCGCCTGGCCCT 8618 || ||||||||||||||| || Sbjct 214607 GTGCGCCACCGCGCCTGGCTCT 214628 >seq15 Length=13258014 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| |||||| || ||||||||||||||||| |||||||||||| ||||||| Sbjct 11367650 CTCCTGGGCTCAAGCGATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCG 11367709 Query 8465 AGCCACCACGCCAAGCTAATTTT 8487 |||||| |||| || ||||| Sbjct 11367710 CGCCACCGCGCCCGGCAGATTTT 11367732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521412455944600