Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq863 156 6e-33
seq9 131 2e-25
>seq863
Length=591582
Score = 156 bits (172), Expect = 6e-33
Identities = 169/224 (75%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||| || |||| ||| ||| ||||| || || |||||||| ||||| |||||
Sbjct 189515 GTCTGGAATAGCCGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGCACATCACACACT 189456
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||| ||||||| ||||| || |||||||||||||| || ||||| |||| || ||
Sbjct 189455 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAACCCGAAG 189396
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
| || || || ||||| | |||| || ||| || || | ||| || |||||||| | |
Sbjct 189395 ACTTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGAACGTGGGGTGGGTAGATCATCTCC 189336
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479
||||| || ||||| | ||| ||||||| || || |||||
Sbjct 189335 ACCTGAGTATCCTTGACTGTGGGAGGATACACCTCCCCATCAAT 189292
Score = 156 bits (172), Expect = 6e-33
Identities = 217/304 (71%), Gaps = 0/304 (0%)
Strand=Plus/Minus
Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342
|||| | ||| || | || ||||| ||||| ||||| | |||| ||||||||||| |
Sbjct 191081 GAACACTGAATGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTG 191022
Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402
|| | |||| ||| || || || ||||| || || ||||| |||||||||||
Sbjct 191021 AGGCAGTGTTGATGATTTTAAAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGT 190962
Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462
| || || |||||| || |||| || ||||| | |||||| || || |||| || |
Sbjct 190961 CAGGCGAACAGATGGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATTTCTA 190902
Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522
||| ||||||| |||||||| | ||||| |||||||| |||| || | | || |
Sbjct 190901 CCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCTACCAGGAGGGCAGGATATA 190842
Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582
|||||| || || | || || ||||||||| | | ||||| || ||||| ||||
Sbjct 190841 GCTCCATGGCATCAATATCACCATAAAGGGCCTCTAACCCCGCAGCCATTTCCTTCTCTC 190782
Query 8583 CTGT 8586
||||
Sbjct 190781 CTGT 190778
Score = 113 bits (124), Expect = 6e-20
Identities = 146/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||| ||||| ||||||||||| ||||| | || ||||| ||| ||| | ||
Sbjct 188491 TCTTACGCCATGGCCCAGTCCTTTGGTGAAACCTGGCCCTCGTTTATGATCCGTCTTGAA 188432
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
||| || || ||||| || ||| |||| || |||||||| | || ||||| ||||||||
Sbjct 188431 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATC 188372
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828
||| |||| | || | |||||| ||||||||||| | | | ||| || ||||
Sbjct 188371 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTAGAATCAGGAAGCTC 188312
Query 9829 TGTTTTACCTGGTGAACGAGAA 9850
| | || |||| || |||||
Sbjct 188311 TTTCTTGCCTGAAAAATGAGAA 188290
Score = 86.0 bits (94), Expect = 9e-12
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
|||||||| || || | || |||||||| || | || || || || ||| || |
Sbjct 187877 TCACCTTTCACACCCATGGGTGTTGGACAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 187818
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
|| ||||||||||| || || |||||||||||| || | |||||| ||||||| |
Sbjct 187817 TAGTAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACGTTGTAAGTT 187758
Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|| || || |||||||||| || || ||||
Sbjct 187757 GGTGGACTCTCAATCAAATGTGACCTGGCTGA 187726
Score = 86.0 bits (94), Expect = 9e-12
Identities = 201/298 (67%), Gaps = 4/298 (1%)
Strand=Plus/Minus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
||||| | ||| || ||||| | |||| ||||| || | |||||||| || || |
Sbjct 190123 CTTACCCTGCCAGCAATTTGCCTGCTGAATGATTCCACAAACTGGGTAAGCCCATGTTCC 190064
Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTCA 9063
| | ||| || |||||||||| || | | | | |||| | ||| || |
Sbjct 190063 AGCAATATAGAGTTGTTGTAGATAAACTGTTGGAAATTGTACTCCTGGTCATCTATTTGC 190004
Query 9064 AATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9123
|| | || |||| || | ||||||||| || | |||||||||| | | ||||||
Sbjct 190003 AAGGTGTCAGGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCTATACGG 189944
Query 9124 TTTTGGTACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATG 9182
||||||||||||||| | | ||| ||||| || || | |||| ||||| || ||
Sbjct 189943 TTTTGGTACTGGAACTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGCTTGAAGTG 189885
Query 9183 GTAGCCGCTGAGCTGCTGAACGTATTGCGTC-ACGATAATGTTGATGGTTTCCCCGAT 9239
||||| || | ||||| || || | | || | | ||| || |||||||| || ||
Sbjct 189884 ATAGCCACTCAAGTGCTGTACATAGT-CTTCAATCACAATCTTAATGGTTTCTCCTAT 189828
>seq9
Length=9398461
Score = 131 bits (144), Expect = 2e-25
Identities = 171/237 (72%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
||||||| || ||| |||| || || || ||||| || |||||||||||| |||| |
Sbjct 7782037 TCTTGACCATATTGAAGCCCATCTCACCACCAAAGGTACTCGGCTTCCAGTACTCCGGAG 7782096
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
|||||||| ||| | | |||||| |||||||| || |||||||| | || | || |
Sbjct 7782097 AGCAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 7782156
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
|||| || ||||||| ||| ||| || ||| |||| | | || | ||| | |||||
Sbjct 7782157 TCTCTCCAAAGATGGAGTTTGGATGGCACTTCTCCAGAAGCAGGCCTGGGTAGAACTCCA 7782216
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
|| |||| |||||| || || || | ||||| || |||||| | || ||||
Sbjct 7782217 AGGCATCGATGTCTCCATACAGCTCCTCCAACTCGGCGGCAATCTCCGTCTCCCCTG 7782273
Score = 91.5 bits (100), Expect = 2e-13
Identities = 118/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| ||||| | |||||| || | |||||||| |||||||| ||| ||| || ||
Sbjct 7788367 TCACCGATGAGGATGAGGCGGGCTGTCTGGAAGAGTTGCTCATCAGCCCAGGTGGGGTGC 7788426
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| ||||| | || ||||| | |||||| || | ||||||| ||||| || | |
Sbjct 7788427 TCGGCCTTCAGCAGGTCACACACGCGGTTGTGCTCACGCAGCCAGAGCGTGGCATAGAGC 7788486
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394
||||||||||| | ||| ||||| |||| || || || ||||
Sbjct 7788487 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACGGCCA 7788529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716772951434560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |