Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq863 156 6e-33 seq9 131 2e-25 >seq863 Length=591582 Score = 156 bits (172), Expect = 6e-33 Identities = 169/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||| || |||| ||| ||| ||||| || || |||||||| ||||| ||||| Sbjct 189515 GTCTGGAATAGCCGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGCACATCACACACT 189456 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| ||||||| ||||| || |||||||||||||| || ||||| |||| || || Sbjct 189455 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAACCCGAAG 189396 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || ||||| | |||| || ||| || || | ||| || |||||||| | | Sbjct 189395 ACTTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGAACGTGGGGTGGGTAGATCATCTCC 189336 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479 ||||| || ||||| | ||| ||||||| || || ||||| Sbjct 189335 ACCTGAGTATCCTTGACTGTGGGAGGATACACCTCCCCATCAAT 189292 Score = 156 bits (172), Expect = 6e-33 Identities = 217/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| || | || ||||| ||||| ||||| | |||| ||||||||||| | Sbjct 191081 GAACACTGAATGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTG 191022 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| || || ||||| ||||||||||| Sbjct 191021 AGGCAGTGTTGATGATTTTAAAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGT 190962 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || |||||| || |||| || ||||| | |||||| || || |||| || | Sbjct 190961 CAGGCGAACAGATGGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATTTCTA 190902 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| ||||||| |||||||| | ||||| |||||||| |||| || | | || | Sbjct 190901 CCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCTACCAGGAGGGCAGGATATA 190842 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||||| || || | || || ||||||||| | | ||||| || ||||| |||| Sbjct 190841 GCTCCATGGCATCAATATCACCATAAAGGGCCTCTAACCCCGCAGCCATTTCCTTCTCTC 190782 Query 8583 CTGT 8586 |||| Sbjct 190781 CTGT 190778 Score = 113 bits (124), Expect = 6e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||| ||||| ||||||||||| ||||| | || ||||| ||| ||| | || Sbjct 188491 TCTTACGCCATGGCCCAGTCCTTTGGTGAAACCTGGCCCTCGTTTATGATCCGTCTTGAA 188432 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| || ||| |||| || |||||||| | || ||||| |||||||| Sbjct 188431 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATC 188372 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 ||| |||| | || | |||||| ||||||||||| | | | ||| || |||| Sbjct 188371 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTAGAATCAGGAAGCTC 188312 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | | || |||| || ||||| Sbjct 188311 TTTCTTGCCTGAAAAATGAGAA 188290 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || |||||||| || | || || || || ||| || | Sbjct 187877 TCACCTTTCACACCCATGGGTGTTGGACAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 187818 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||||||||| || || |||||||||||| || | |||||| ||||||| | Sbjct 187817 TAGTAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACGTTGTAAGTT 187758 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || || || |||||||||| || || |||| Sbjct 187757 GGTGGACTCTCAATCAAATGTGACCTGGCTGA 187726 Score = 86.0 bits (94), Expect = 9e-12 Identities = 201/298 (67%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| | |||| ||||| || | |||||||| || || | Sbjct 190123 CTTACCCTGCCAGCAATTTGCCTGCTGAATGATTCCACAAACTGGGTAAGCCCATGTTCC 190064 Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTCA 9063 | | ||| || |||||||||| || | | | | |||| | ||| || | Sbjct 190063 AGCAATATAGAGTTGTTGTAGATAAACTGTTGGAAATTGTACTCCTGGTCATCTATTTGC 190004 Query 9064 AATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9123 || | || |||| || | ||||||||| || | |||||||||| | | |||||| Sbjct 190003 AAGGTGTCAGGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCTATACGG 189944 Query 9124 TTTTGGTACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATG 9182 ||||||||||||||| | | ||| ||||| || || | |||| ||||| || || Sbjct 189943 TTTTGGTACTGGAACTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGCTTGAAGTG 189885 Query 9183 GTAGCCGCTGAGCTGCTGAACGTATTGCGTC-ACGATAATGTTGATGGTTTCCCCGAT 9239 ||||| || | ||||| || || | | || | | ||| || |||||||| || || Sbjct 189884 ATAGCCACTCAAGTGCTGTACATAGT-CTTCAATCACAATCTTAATGGTTTCTCCTAT 189828 >seq9 Length=9398461 Score = 131 bits (144), Expect = 2e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || ||| |||| || || || ||||| || |||||||||||| |||| | Sbjct 7782037 TCTTGACCATATTGAAGCCCATCTCACCACCAAAGGTACTCGGCTTCCAGTACTCCGGAG 7782096 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| ||| | | |||||| |||||||| || |||||||| | || | || | Sbjct 7782097 AGCAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 7782156 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||||| ||| ||| || ||| |||| | | || | ||| | ||||| Sbjct 7782157 TCTCTCCAAAGATGGAGTTTGGATGGCACTTCTCCAGAAGCAGGCCTGGGTAGAACTCCA 7782216 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| |||||| || || || | ||||| || |||||| | || |||| Sbjct 7782217 AGGCATCGATGTCTCCATACAGCTCCTCCAACTCGGCGGCAATCTCCGTCTCCCCTG 7782273 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || | |||||||| |||||||| ||| ||| || || Sbjct 7788367 TCACCGATGAGGATGAGGCGGGCTGTCTGGAAGAGTTGCTCATCAGCCCAGGTGGGGTGC 7788426 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| || | ||||||| ||||| || | | Sbjct 7788427 TCGGCCTTCAGCAGGTCACACACGCGGTTGTGCTCACGCAGCCAGAGCGTGGCATAGAGC 7788486 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | ||| ||||| |||| || || || |||| Sbjct 7788487 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACGGCCA 7788529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716772951434560