Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq56 136 4e-27 seq101 122 8e-23 seq1820 98.7 9e-16 >seq56 Length=5723395 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||||||| ||||||||| ||||| ||||| || ||||||||| Sbjct 4239621 AGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 4239680 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || || || || ||||| | ||| ||||| | ||| | || ||| Sbjct 4239681 CCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 4239740 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | ||||| || | ||||||||||| || Sbjct 4239741 TTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 4239800 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| |||| ||||| ||||| |||||||| Sbjct 4239801 ATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 4239838 Score = 134 bits (148), Expect = 1e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||||||| ||||||||| ||||| ||||| || ||||||||| Sbjct 4239393 AGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 4239452 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || || || || ||||| | ||| ||||| | ||| | || ||| Sbjct 4239453 CCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 4239512 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | ||||| || | ||||||||||| || Sbjct 4239513 TTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 4239572 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || |||| ||||| ||||| ||||||||| Sbjct 4239573 ATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATG 4239611 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| ||| ||||||||| || || ||||| || ||||||||| Sbjct 4239165 AGGCGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGC 4239224 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || || || || ||||| | ||| ||||| | ||| | || ||| Sbjct 4239225 CCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 4239284 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | ||||| || | ||||||||||| || Sbjct 4239285 TTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 4239344 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || |||| ||||| ||||| ||||||||| Sbjct 4239345 ATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATG 4239383 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || ||||| ||| ||||||||| ||||| ||||| || ||||||||| | || || Sbjct 4238946 ACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 4239005 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || || || || ||||| | ||| ||||| | ||| | || ||| || || | Sbjct 4239006 AGCTGTTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCTTGG 4239065 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || ||| ||| | | ||||| || | ||||||||||| || || || || Sbjct 4239066 ATCTTCC-CTTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 4239124 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||| ||||| ||||| ||||||||| Sbjct 4239125 GCCGGTCAAGGTCTTCACGAAGATCTGCATG 4239155 >seq101 Length=4626942 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||||||||| ||| ||| || || ||||| || || || || ||||| | || || Sbjct 1982770 ACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1982829 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || || || | ||| ||||| | ||| | || |||||| ||| | Sbjct 1982830 AGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 1982889 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | |||||||| | ||||| |||| ||||| || || Sbjct 1982890 ATCTTGGCCTTCACATTTTCGATGGTGTCGCTGGGTTCCACTTCCAGGGTTATGGTCTTG 1982949 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| ||||| ||||| ||||||||| Sbjct 1982950 CCGGTCAGGGTCTTCACGAAGATCTGCATG 1982979 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||||||||| ||| ||| ||||| ||||| || || || || ||||| | || || Sbjct 1982542 ACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1982601 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || || || | ||| ||||| | ||| | || |||||| ||| | Sbjct 1982602 AGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 1982661 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | ||||| || | ||||| |||| || || || || Sbjct 1982662 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTG 1982721 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| ||||| ||||| ||||||||| Sbjct 1982722 CCGGTCAGGGTCTTCACGAAGATCTGCATG 1982751 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||||||||| ||| ||| ||||| ||||| || || || || ||||| | || || Sbjct 1982998 ACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1983057 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || || || | ||| ||||| | ||| | || |||||| || | Sbjct 1983058 AGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCTTGG 1983117 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | ||||| || | |||||||||| || || || || Sbjct 1983118 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTG 1983177 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| ||||| ||||| |||||||| || Sbjct 1983178 CCAGTCAGGGTCTTCACGAAGATCTGCATTTT 1983209 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| || || || ||| ||||| ||||| || || Sbjct 1982292 ACAGCCACCCCTCAGACGAAGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATC 1982351 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || ||||||||||| || || || || | ||| ||||| | Sbjct 1982352 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGG 1982411 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || |||||| || ||| || ||||| | || || || | ||| Sbjct 1982412 GGGGATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTATCACTGGGCTC 1982471 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || | || || || || || ||||| ||||| ||||| ||||||||| Sbjct 1982472 TACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 1982523 >seq1820 Length=90317 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || || ||| ||||| | ||| || || || || ||||| | || || Sbjct 66963 ACCAGGTGGAGAGTCGACTCTTTCTGGAGGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 66904 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || || || | ||| ||||| | | | | || ||| || || | Sbjct 66903 AGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCGGGGCGGATGCACTCTTTATCTTGG 66844 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | ||||| || | |||||||||| || || || || Sbjct 66843 ATCTTGGCCTTCACAGTTTCGATTGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTG 66784 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| ||||| |||||||||||||| || Sbjct 66783 CCAGTCAGTGTCTTCACGAAAATCTGCATTTT 66752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462237029486800