Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq2451 170 2e-37 seq4688 161 1e-34 seq4293 136 5e-27 seq2324 134 2e-26 seq4091 113 5e-20 seq3773 102 1e-16 seq758 96.9 4e-15 seq127 96.9 4e-15 seq4988 95.1 1e-14 >seq2451 Length=31860 Score = 170 bits (188), Expect = 2e-37 Identities = 216/297 (73%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 145646 TGGGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGT 145705 |||| | ||| || || ||| || ||||| || || | || | |||||| || Sbjct 18222 TGGGGAGGGGACGCGGTGTCCGGGAAAGCTGCAGGGCCACCTGATCGAAGTGGTTCCTGT 18281 Query 145706 AGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGG 145765 | | ||||| || ||| ||| | ||| || ||||||| ||||| |||| |||| Sbjct 18282 ACAGGTGCGTATCTCCCGTCGTGTGCACGAACTCTCCGGGCTGCAGGCCGGTGACCTGGG 18341 Query 145766 CGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGT 145825 | | |||| || ||||| | |||| ||||||||||||||| || ||||| || || Sbjct 18342 CCATCATGAGCGTAAGCAGCGCGTAGGAGGCTATGTTGAAGGGAACGCCCAGGAACACGT 18401 Query 145826 CCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACA 145885 | | |||||| |||||||||||||| || | ||||| ||||||||||||||| ||| Sbjct 18402 CGGCGCTGCGCTGATACAGCTGGCAGGACAGTTTTCCGCCGGCCACGTAGAACTGGAACA 18461 Query 145886 GGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGA 145942 || ||||||||| ||||||||||| | || || |||||||||||||| |||| Sbjct 18462 GGCAGTGGCAGGGGGGCAGGGCCATCTGGTCCACCTCGGCCGGGTTCCAGGCCGTGA 18518 >seq4688 Length=13253 Score = 161 bits (178), Expect = 1e-34 Identities = 182/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 145695 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCC 145754 |||||||||||||| ||| | ||| || | | ||||| ||| || ||||||| ||||| Sbjct 3980 GTGGTTGAGGTAGATGTGGGTGTCGCCGAAGGAGTGGACGAACTCGCCGGGCTGCAGGCC 3921 Query 145755 CGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCC 145814 ||||| || |||| ||| ||| || |||| ||| ||| |||||||||||||| || Sbjct 3920 CGTGACCTGTGCGATCATCATGGTGAGGAGGGCATAGGAGGCGATGTTGAAGGGCACTCC 3861 Query 145815 CAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTA 145874 || | ||| | ||||||||| ||||||||| || ||| | || ||||| Sbjct 3860 GAGGAAGACGTCGGCGCTGCGCTGGTAGAGCTGGCAGCTCAGGCGGCCGTCGGCTACGTA 3801 Query 145875 GAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCA 145934 ||||||| ||||| |||||||||||| |||||||| | | ||| ||||||||||| Sbjct 3800 GAACTGGAACAGGCAGTGGCAGGGCGGGAGGGCCATCTTGTCGATGTCGGCCGGGTTCCA 3741 Query 145935 GGCG 145938 |||| Sbjct 3740 GGCG 3737 >seq4293 Length=67978 Score = 136 bits (150), Expect = 5e-27 Identities = 247/359 (69%), Gaps = 3/359 (1%) Strand=Plus/Plus Query 145661 GGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCC 145719 ||||| | ||| |||||||| | || | || | ||||||||||||| ||| | ||| Sbjct 67177 GGCTCGCGGGTGAGCTGGAGGTCCACCTGGTCGAAATGGTTGAGGTAGATGTGGGTGTCG 67236 Query 145720 CCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTC 145779 ||| | ||||||||| || || || | || || || || | ||| ||| Sbjct 67237 CCCGTGGTGTGGATGAATTCGCCCGGAGCCAGCCCGCACTCCTGTGCTATCATCATGGTG 67296 Query 145780 AGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGG 145839 ||||| |||||| ||| |||||||||||||| ||||| ||||| | ||||||| Sbjct 67297 AGCAGCGAGTAGGAGGCGATGTTGAAGGGCACGCCCAGGAAGGTGTCCGCGCTGCGCTGG 67356 Query 145840 TACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGC 145899 || ||||||||| ||| ||| ||||||| ||||||||| | ||| |||||| || Sbjct 67357 TAGAGCTGGCAGCTGAGGCGGCCGTCCGCCACATAGAACTGGAAGAGGCAGTGGCACGGG 67416 Query 145900 GGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTC 145959 || || ||||| | || || | |||||||| |||| | || ||| | | ||| Sbjct 67417 GGAAGCGCCATCATGTCCACCTCGCCGGGGTTCCATGCGGATACGATGAGGCGGCGGCTG 67476 Query 145960 TCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCG 146018 || || || || || |||| | || | | | | |||||||| | | |||| |||| Sbjct 67477 TCCGGATTGCTTTTTATCTGGTCGATGACATTCTTCAGCTGGTCGATG--CTGCGCCCG 67533 >seq2324 Length=83463 Score = 134 bits (148), Expect = 2e-26 Identities = 229/331 (69%), Gaps = 2/331 (1%) Strand=Plus/Plus Query 145688 GCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCT 145747 |||||| |||||||||||||| ||| | ||| || | ||||||||| || || ||| Sbjct 68165 GCTCCATGTGGTTGAGGTAGATGTGGGTGTCGCCTGTGGTGTGGATGAATTCGCCCGGCC 68224 Query 145748 CGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGG 145807 ||| || || || | ||| ||| | ||| || || || |||||||| | Sbjct 68225 GGAGCCCGCATTCCTGCGCTATCATCATGGTTAACAGCGAATACGACGCGATGTTGAACG 68284 Query 145808 GCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCG 145867 |||| || || |||| | ||||||||| |||||||| ||||| | ||| ||| Sbjct 68285 GCACGCCGAGGAAAGTGTCGGCGCTGCGCTGGTAGAGCTGGCACGAGAGTTTCCCCTCCG 68344 Query 145868 CCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCG 145927 |||||||||||||| ||||| ||||||||| ||||| ||||| || || | | Sbjct 68345 CCACGTAGAACTGGAACAGGCAGTGGCAGGGGGGCAGCGCCATCCTCTCCACTTCGCCAG 68404 Query 145928 GGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCA 145987 |||||||||| |||| | |||| | ||||| ||||| |||| ||| |||| Sbjct 68405 GGTTCCAGGCCGTGACCATCAGCCGGCGCGAGTCGGGAGAGCTCTTTATCTGCCCAATCA 68464 Query 145988 GGTCCCTGAGCTGGTCCACGCCCTGCCCCCG 146018 | | |||||||| ||| |||| |||| Sbjct 68465 CCTGTTTCAGCTGGTCGACG--CTGCTCCCG 68493 >seq4091 Length=21372 Score = 113 bits (124), Expect = 5e-20 Identities = 216/313 (69%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 145635 GATCCTGAGCCTGGGAAAGGGCCGGGGGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCA 145693 |||| | | | |||| | ||| || || ||| | ||||| |||||| || |||| | Sbjct 9540 GATCTTCATCGTGGGCAGGGGGCGCGG-CTCACGGGTCAACTGGAGTTTGGCCTGCTCGA 9482 Query 145694 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGC 145753 ||||| || |||| || | ||| ||| | |||||||||||| || | || | || Sbjct 9481 TATGGTTCAGATAGAGATGGGTGTCGCCCGTGGTGTGGATGAAGTCGCCCGCCTTGTAGC 9422 Query 145754 CCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCC 145813 |||| | || || | ||| | | |||||||| || ||| |||||||| ||||| | Sbjct 9421 CCGTCACCTGTGCCATCATCTGGAGCAGCAGGGCATACGAGGCGATGTTGAATGGCACGC 9362 Query 145814 CCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAG-GAGAGCTCCCCGCCCGCCACG 145872 |||| | || ||||||||||||| || | |||| || || |||| ||||| Sbjct 9361 CCAGGAAGGTATCAGCCGAGCGCTGGTAGAG-TTGCAGCGACAGACGGTCGCCAGCCACA 9303 Query 145873 TAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTC 145932 ||||||||| | | | ||| ||||| |||| |||||| | || || ||| |||| Sbjct 9302 TAGAACTGGAAGATGGTGTGACAGGGGGGCAAGGCCATCTTGTTCACCTCAGCCACGTTC 9243 Query 145933 CAGGCGGTGAGGA 145945 ||||| | || || Sbjct 9242 CAGGCCGAGACGA 9230 >seq3773 Length=40482 Score = 102 bits (112), Expect = 1e-16 Identities = 173/247 (70%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 145669 GTCAGCTGGAGCTTCAGGG---GCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGG 145725 |||||||| |||| ||| |||| | |||||||||||||| ||| | ||| || || Sbjct 39142 GTCAGCTGCAGCT---GGGCCTGCTCGATGTGGTTGAGGTAGAGGTGAGTGTCGCC-AGT 39087 Query 145726 ACG-TGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAG 145784 | || ||||| || || | |||||| | || | || || | ||| | ||||| Sbjct 39086 AGAATGAATGAAATCGCCAGTTTCGAGGTCTGTCACCTGCGCCATCATCTGCAGCAGCAA 39027 Query 145785 GGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAG 145844 | ||| ||||||||||| ||||| || || |||| |||| || || || || Sbjct 39026 AGCGTACGATGCTATGTTGAAAGGCACGCCGAGGAAGGTGTCTGCCGAACGTTGATAGAG 38967 Query 145845 CTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAG 145904 ||| ||||| |||| | || ||||||||||| ||||| |||||| |||||||| Sbjct 38966 CTGTAGCGAGAGTCGCCCGTCAGCGACGTAGAACTGAAACAGGCAGTGGCATGGCGGCAG 38907 Query 145905 GGCCATG 145911 |||||| Sbjct 38906 TGCCATG 38900 >seq758 Length=33601 Score = 96.9 bits (106), Expect = 4e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 145728 GTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGA 145787 ||| | ||| || || ||||||||||| | || || | ||| ||| || || | Sbjct 8548 GTGAACGAATTCACCAGGCTCGAGGCCGCAGGTTTGCGCTATCATCATGGTGAGAAGCGC 8607 Query 145788 GTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTG 145847 |||| || || ||||| || || ||||| || ||| | ||||||||| ||||| Sbjct 8608 GTAGGACGCGATATTGAACGGAACACCCAGGAACACGTCTGCGCTGCGCTGGTAGAGCTG 8667 Query 145848 GCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGC 145907 ||||||||| | |||| ||||| ||||||||| | || ||||||||| ||||| || Sbjct 8668 GCAGGAGAGTTTCCCGTTTGCCACATAGAACTGGAAAAGACAGTGGCAGGGAGGCAGCGC 8727 Query 145908 CAT 145910 ||| Sbjct 8728 CAT 8730 >seq127 Length=36082 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 145690 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCG 145749 |||| |||||| ||||||| ||| | ||| || | |||||||| || || || | Sbjct 867 TCCAAGTGGTTCAGGTAGAGGTGTGTGTCGCCGGTGGTATGGATGAACTCACCCGGTTTC 926 Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 || ||||| | || || | |||| |||||||| || ||| ||||||||||| Sbjct 927 AGTCCCGTCACCTGAGCCATCATGAGCAGCAGCAGGGCATACGAGGCAATGTTGAAGGGA 986 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAG-GAGAGCTCCCCGCCCGC 145868 || || || | || |||| |||||||| |||| |||| || || || ||| || Sbjct 987 ACGCCGAGGAAGGTATCGGCCGAACGCTGGTAGAGCT-GCAGCGAAAGTTCACCGTTGGC 1045 Query 145869 CACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGG 145928 || ||||||||| ||| | ||||||||||| || ||||| | || || ||| Sbjct 1046 AACATAGAACTGGAACATGGTATGGCAGGGCGGAAGCGCCATCTTGTTCATTTCAGCCAC 1105 Query 145929 GTTCCAGGCG 145938 ||||||||| Sbjct 1106 ATTCCAGGCG 1115 >seq4988 Length=203393 Score = 95.1 bits (104), Expect = 1e-14 Identities = 189/280 (68%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 145669 GTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACG 145728 || ||||| || || | | || | |||||| || |||| ||| || || |||| | Sbjct 157290 GTGAGCTGAAGTTTGACCTGGTCAAGGTGGTTCAGATAGATGTGGGCATCGCCCAAAGTG 157349 Query 145729 TGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAG 145788 |||| ||| ||||||| || ||||| | || || ||| | || ||||| Sbjct 157350 TGGACAAAGGTACCGGGCTGAAGTCCCGTCACCTGAGCTGTCATCATGAGCAACAGGGCA 157409 Query 145789 TAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGG 145848 ||| || |||||||| ||||| ||||| ||||| |||| ||||| || ||||| Sbjct 157410 TAGGACGCAATGTTGAAAGGCACGCCCAGAAAGATGTCGGCCGAACGCTGATAAAGCTGA 157469 Query 145849 CAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCC 145908 || || | || | || || ||||||||| | | | |||||||||||||| ||| Sbjct 157470 AGCGAAAGTTTGCCTTCGGCTACATAGAACTGGAAGAACATGTGGCAGGGCGGCAACGCC 157529 Query 145909 ATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGA 145948 || |||| || ||| |||||||| | || ||||| Sbjct 157530 ATCTGCGGCACATCGGCCACATTCCAGGCCGAGACGACGA 157569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590039189979960