Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq4688 136 3e-27 seq2451 125 6e-24 seq3719 84.2 2e-11 seq4012 82.4 7e-11 >seq4688 Length=13253 Score = 136 bits (150), Expect = 3e-27 Identities = 189/262 (72%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 20936 GTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCC 20995 ||||||| ||| | ||||| ||| || |||| ||| || || || || || |||||| Sbjct 3980 GTGGTTGAGGTAGATGTGGGTGTCGCCGAAGGAGTGGACGAACTCGCCGGGCTGCAGGCC 3921 Query 20996 CGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCC 21055 |||||| || ||||||| || |||||||| ||| ||||||||| || || || || Sbjct 3920 CGTGACCTGTGCGATCATCATGGTGAGGAGGGCATAGGAGGCGATGTTGAAGGGCACTCC 3861 Query 21056 GAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACA-GCTCCCCCCGAGCCACGT 21114 |||| | ||||||| | |||||| ||||||||| || || || || || |||| Sbjct 3860 GAGGAAGACGTCGGCGCTGCGCTGGTAGAGCTGGCAGCTCAGGCGGCCGTCG-GCTACGT 3802 Query 21115 AAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCC 21174 | ||||| ||| ||| || || ||||| |||||| ||| ||| || ||||||| Sbjct 3801 AGAACTGGAACAGGCAGTGGCAGGGCGGGAGGGCCATCTTGTCGATGTCGGCCGGGTTCC 3742 Query 21175 ACGCGCACATAACGATGCGCCG 21196 | ||||| | | |||||| || Sbjct 3741 AGGCGCAGACGAGGATGCGGCG 3720 >seq2451 Length=31860 Score = 125 bits (138), Expect = 6e-24 Identities = 198/284 (70%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 20895 GGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGG 20954 |||||||| |||| ||||| || || |||| | |||||| |||| | ||| Sbjct 18230 GGACGCGGTGTCCGGGAAAGCTGCAGGGCCACCTGATCGAAGTGGTTCCTGTACAGGTGC 18289 Query 20955 GCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGA 21014 | || ||| |||||||| || ||||| || |||||| ||||| || || |||| Sbjct 18290 GTATCTCCCGTCGTGTGCACGAACTCTCCGGGCTGCAGGCCGGTGACCTGGGCCATCATG 18349 Query 21015 TACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGAC 21074 ||| || || |||||| ||| ||||| || || || || ||| || ||||||| Sbjct 18350 AGCGTAAGCAGCGCGTAGGAGGCTATGTTGAAGGGAACGCCCAGGAACACGTCGGCGCTG 18409 Query 21075 CTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGA 21134 | ||| ||||||||||||||||| | || | |||||||| ||||| ||| ||| Sbjct 18410 CGCTGATACAGCTGGCAGGACAGTTTTCCGCCGGCCACGTAGAACTGGAACAGGCAGTGG 18469 Query 21135 CAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 || || || || |||||| | | | || || |||||||| || Sbjct 18470 CAGGGGGGCAGGGCCATCTGGTCCACCTCGGCCGGGTTCCAGGC 18513 >seq3719 Length=49728 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||| ||| || | || | |||||||||||| | || |||| || ||||| || Sbjct 23602 AGCTGCAGCTTCACCTGTTCGATGTGGTTGTTGTAGATATGCACGTCGCCGAAGGTATGG 23661 Query 20973 ACAAAGTCTCCCGGGGTC-AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTA 21031 || || || ||||| || || | || ||||| |||| ||||| || | || Sbjct 23662 ACGAAATC-ACCGGGTTCGAGATCGCACACCTGAGCCATCATCATGGTCAGCAGCGAATA 23720 Query 21032 GCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCA 21091 |||||||| ||||| || ||||| || |||||| || | ||||| |||||||| Sbjct 23721 CGAAGCGATGTTGAACGGCACGCCGAGAAACACGTCGGCCGAGCGTTGGTAAAGCTGGCA 23780 Query 21092 GGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCC 21149 ||||||| || ||||| || ||||| | || | ||||| ||||| || ||| Sbjct 23781 CGACAGCTTGCCGTTTGCCACATAGAACTGGAAGAAGGCATGACAGGGAGGCAGTGCC 23838 >seq4012 Length=43821 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 20967 GTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGG 21026 |||| ||| || || || || |||| || || || ||||| | || |||||| || Sbjct 16437 GTGTACACGAAATCGCCTGGTTTCAGTCCAGTCACCTGAGCCACCATCATCGTCAGCAGC 16496 Query 21027 GCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGC 21086 || || |||||||| || || || || || || | | ||||| ||||| |||||| Sbjct 16497 GCATAACTGGCGATATTGAAAGGCACGCCAAGAAACGTATCGGCACTTCTCTGATACAGC 16556 Query 21087 TGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGA 21146 ||||| ||| | || |||||| |||||||| ||| || ||||| ||||| ||| Sbjct 16557 TGGCAACTCAGTTTTCCGTCAGCCACATAAAACTGGAACAGAATATGACATGGAGGCAGA 16616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427749416261520