Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq4608 123 4e-23 seq4991 87.8 3e-12 seq4575 87.8 3e-12 seq187 87.8 3e-12 seq2445 86.0 1e-11 >seq4608 Length=10154 Score = 123 bits (136), Expect = 4e-23 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 271755 GGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCGACTGAGCTATCACG 271814 ||| |||||||| |||| | | |||| ||||| | ||||||||| ||||||||| | | Sbjct 9524 GGAATCGAACCACGGACACGGGGATTTTCAGTCCCCTGCTCTACCAACTGAGCTACCGAG 9583 Query 271815 GAATTAAATGGCGCGCCCAAGGGGACTCGAACCCCTGACCACCCGCGTGACAGGCGGGTA 271874 | | || ||||| || ||||||||| |||||||||||| || ||||||||| || | Sbjct 9584 GCTTAAAGTGGCGACCCGAAGGGGACTTGAACCCCTGACCTCCGCCGTGACAGGGCGGCA 9643 Query 271875 TTCTAACCAACTGAACTA 271892 |||||||||||| ||||| Sbjct 9644 TTCTAACCAACTAAACTA 9661 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/98 (81%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 271732 TTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTT 271791 |||| || |||||||| | ||||||||||||||| ||| | ||||||||||||| | Sbjct 10043 TTTAAAA-ATGGCTCCCCGGACTGGACTCGAACCAGTGACTCCCTGATTAACAGTCAGGT 10101 Query 271792 GCTCTACCGACTGAGCTATCACGGA--ATTAAATGGCG 271827 |||||||||||||||||| | ||| | ||| ||||| Sbjct 10102 GCTCTACCGACTGAGCTACCGAGGAACACTAACTGGCG 10139 >seq4991 Length=73519 Score = 87.8 bits (96), Expect = 3e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 272866 AGTATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCT 272925 |||||||||||| |||| ||| ||||||||| ||| || ||||||||||| ||||| Sbjct 63066 AGTATATGGTGGTCCCACTAGGGCTTGAACCTAGGACAAACGGATTATGAGTCCGCTGCT 63007 Query 272926 CTAACCAACTGAGCTATAGGCCC 272948 |||||| |||||||||| || || Sbjct 63006 CTAACCGACTGAGCTATGGGACC 62984 >seq4575 Length=28649 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931 |||||| |||| ||||||||||||| |||| | || ||||||| || |||||||||| Sbjct 5885 TGGTGGACCCACTAGGACTTGAACCTAGGACCGACCGGTTATGAGCCGGTTGCTCTAACC 5944 Query 272932 AACTGAGCTATAGGCCCT 272949 |||||||||||||| ||| Sbjct 5945 AACTGAGCTATAGGTCCT 5962 >seq187 Length=19161 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 272873 GGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCT-CTAACC 272931 ||||||||||| ||| ||||||||| ||||| ||||||||||| |||| |||||| Sbjct 7058 GGTGGGCCCAGTAGGGCTTGAACCTACGACCCCCTGATTATGAGTCAGGTGCTACTAACC 6999 Query 272932 AACTGAGCTATAGGCCCTTT 272951 ||||||||||||||||| || Sbjct 6998 AACTGAGCTATAGGCCCATT 6979 >seq2445 Length=42024 Score = 86.0 bits (94), Expect = 1e-11 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 272874 GTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACCAA 272933 |||| |||||||||| |||||||||||||| | ||||||||||| ||||||||||| Sbjct 34163 GTGGCCCCAGCAGGATTTGAACCTGCGACCCACGGATTATGAGTCCGCTGCTCTAACC-G 34105 Query 272934 CTGAGCTATAGGCCCTT 272950 ||||||||| || |||| Sbjct 34104 CTGAGCTATGGGGCCTT 34088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896883631235760