Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq143 127 2e-24 seq1923 123 3e-23 seq2085 120 3e-22 seq1790 118 1e-21 seq2794 105 7e-18 seq2701 104 3e-17 seq3941 96.9 4e-15 seq2964 95.1 1e-14 seq2941 82.4 8e-11 >seq143 Length=132465 Score = 127 bits (140), Expect = 2e-24 Identities = 176/246 (72%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 6481 AGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAAT 6540 ||| || || |||||||| ||||| | || ||||| || | ||| ||||||||| | Sbjct 18320 AGCCTCGCCGAAACAAACAGCTTTACCGGCTATAACGTGTTCCAACGGACCGCCTTGAGT 18379 Query 6541 ACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAG 6600 ||||| || | | ||||| || || || || ||||| | || ||| || | ||| | Sbjct 18380 TCCCGGAAATACGGATGAATTAACCTTTTTTGCAATATCCGGATTGTTGGTTAAAATCAT 18439 Query 6601 GCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCACCCCA 6660 || || ||||| |||||||||||||| || ||||| || ||||||| |||||| | Sbjct 18440 TCCGCCGCGAGGCCCGCGCAAAGTTTTGTGTGTTGTGGTGGTAACAATATCGGCA---AA 18496 Query 6661 TTTGAGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCATATCGAC 6720 | | ||||| | ||| || || || || ||||| ||||| || |||||||| || Sbjct 18497 ATCTAACGGATTCGGGTGTTCACCGGCCGCCACCAAGCCTGCAAAGTGAGCCATATCAAC 18556 Query 6721 CATCAA 6726 ||| || Sbjct 18557 CATTAA 18562 Score = 111 bits (122), Expect = 2e-19 Identities = 181/258 (70%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 6985 ATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGG 7044 |||||| | ||| ||||| | ||||| ||| |||||||| ||||||||||| Sbjct 18812 ATCACCGGCACTCAAAAGTGCCAGATAAACAGCCATATTTGCTTGGCTGCCGGAATGAGG 18871 Query 7045 TTGAACGTTTGCGAAAT-TGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCT 7103 ||||| || | || | ||| | |||| |||| ||| || |||||||||||||| || | Sbjct 18872 CTGAACATTAACAAATTCTGC-ATTAAAAAGTTTTTTTGCGCGCTCAATTGCCAGATTTT 18930 Query 7104 CGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCAT 7163 | || ||||| | |||| |||| |||||| || | ||||||| || || |||| Sbjct 18931 CAATCTCATCAATAAATTCGCACCCGCAATAATAGCGGTGAGCCGGATAACCTTCGGCAT 18990 Query 7164 ACTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGG 7223 | ||||| || | ||| || || || |||| ||| || | || ||| ||||| | Sbjct 18991 ATTTGTTTGTCAGAATTGACCCTTGCGCTTCCATTACCGCACGCGATACAATATTTTCCG 19050 Query 7224 ACGCAATCAAGCAAACTT 7241 | ||||| || ||||| Sbjct 19051 AGGCAATTAATTCAACTT 19068 >seq1923 Length=163503 Score = 123 bits (136), Expect = 3e-23 Identities = 173/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 6985 ATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGG 7044 ||| ||||| || || | || | |||| ||| || || |||| ||| ||||| || Sbjct 39422 ATCTCCCGGTTTGAGCACTGTAAGCAAAACAGCCGCATTAGCCTGTGCACCAGAATGTGG 39481 Query 7045 TTGAACGTTTGCGAAATT--GCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTC 7102 |||||||| || | ||| || | || ||||||| | | || ||||| | || Sbjct 39482 CTGAACGTTGGC-ATATTCAGCGCCGAAGAGTTTCTTTA-CTCTTTCTATTGCGATAGTC 39539 Query 7103 TCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCA 7162 ||| ||| ||| | || |||| ||||||||||| |||||||| |||||||| || ||| Sbjct 39540 TCGGTTTGATCCACAATTTCGCACCCGCCATAATAACGTTTGCCAGGATATCCTTCCGCA 39599 Query 7163 TACTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTC 7221 |||||||| |||| ||||||||||||| |||||| | ||| ||||||||||| Sbjct 39600 TACTTGTTAGTAAGGCATGAACCCTGTGCTTCCATAACTTGGTCGCTGACATAGTTTTC 39658 >seq2085 Length=24988 Score = 120 bits (132), Expect = 3e-22 Identities = 198/285 (69%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 6479 AGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGA 6538 || || ||||| || ||||| || || | ||||||| || | |||||| ||||| ||| Sbjct 20194 AGCGCCTCACCGAAGCAAACCGCCTTGCCCGCGATAATGTGCATAAGCGGACCGCCCTGA 20253 Query 6539 ATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATG 6598 |||||||||| ||||| ||||| | ||||| || | | || ||||| || || || Sbjct 20254 GTACCCGGGAAAATAGCGGAATTAATCTTCTTTGCAAGCGCGGCGTCGTTCGTGAGGATT 20313 Query 6599 AGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCACCC 6658 | ||| || | || || || | || ||||| ||||| || ||||| ||||| ||| | Sbjct 20314 AAGCCTCCCCTCGGACCTCGAAGGGTCTTATGGGTTGTCGTTGTAACTACGTCCGCATAC 20373 Query 6659 CATTTGAGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCATATCG 6718 | | | | | |||||| | || ||||||| || || | ||| ||||||||| Sbjct 20374 GGTATCGGAGACTG---GTGAAGTCCCGCCGCAACAAGACCTGCGATATGCGCCATATCG 20430 Query 6719 ACCATCAATTTGGCTCCAATTGAATGAGCTGCATCAGCGATTTTC 6763 ||||| || ||||| || ||||| | ||||| ||| || Sbjct 20431 ACCATAAAGAGCGCTCCGTTTTCGTGAGCAACCTCAGCCATTCTC 20475 >seq1790 Length=10973 Score = 118 bits (130), Expect = 1e-21 Identities = 203/295 (69%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 |||||||| ||||| |||||| ||||| |||| | | || | || || || || Sbjct 4636 CCGTGAGTCAGATGTCCGCCGTGGTCCAGATTCATACCCATGACAGTGTCGCCTGGTTTT 4695 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 | | || | ||| ||| ||||| |||| |||||||||||||| ||||| | Sbjct 4696 AATACAGCAAACTGAACAGCCATATTTGCCTGTGCTCCGGAATGAGGTTGTACGTTGACA 4755 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 | | ||| | ||||| |||||| ||||| || |||||| | ||| | ||| | Sbjct 4756 TATTCGCATCCAAACAATTCTTTTGCACGTTCTCTTGCCAAATCCTCTACAATATCCACC 4815 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177 || |||| || |||||||| || ||||||||||| ||||| || || ||||| || | Sbjct 4816 TTAGCGCAACCACCATAATAACGCTTGCCCGGATAACCCTCGGCGTATTTGTTTGTGAGT 4875 Query 7178 ATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGGACGCAATCA 7232 | ||| ||| ||| ||| ||| | ||| || |||| || || ||||||| Sbjct 4876 ACAGATCCCATAGCTGACATTACAGCCGTTGATACCCAGTTCTCAGAAGCAATCA 4930 >seq2794 Length=4126 Score = 105 bits (116), Expect = 7e-18 Identities = 206/298 (69%), Gaps = 6/298 (2%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 |||||||| ||||| |||||| ||| | ||| | | || | ||||| |||| | Sbjct 3337 CCGTGAGTCAGATGACCGCCGTGAGCCAGGCTCATTCCCATAATGGTGTCACCAGGCTGC 3396 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || ||| |||||| || || || || ||||| |||||||| ||||| || || Sbjct 3397 GCTAGCGCTGCGTAAACAGCAGCATTGGCCTGAGAACCTGAATGAGGCTGAACATTGGCA 3456 Query 7058 -AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGC 7116 ||| |||| | || ||| | || || | |||||||| || | || | || ||| | Sbjct 3457 TAAACTGCACCGAA-CAGCTGCTTTGCTCTTTCAATTGCAAGAGTTTCAACTTTATCAAC 3515 Query 7117 TTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAA 7176 | | | || |||||||| || | ||||| ||||| || |||||||| |||||||| | Sbjct 3516 ATATTCACAACCGCCATAGTATCTCTTGCCAGGATAACCTTCAGCATATTTGTTGGTCAG 3575 Query 7177 AATAGAACCCTGTGCTTTCATAACATCGTCTGACA--CATAGTTTTCGGACGCAATCA 7232 || ||||| |||| |||||| || ||| | ||||||||||| || |||| Sbjct 3576 CTGGGATCCCTGAGCTTCCATAACG-CGAG-GACTTGCGTAGTTTTCGGATGCGATCA 3631 >seq2701 Length=6067 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 65949 TGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGT 66008 || |||||||||| || | || ||| | || || || ||||| | || || ||| Sbjct 5356 TGAGTGAAAGTTCTTGTTACAACATCCTGCTGCTGTTCTTTGGTTAAAGAGTTGAAACGT 5297 Query 66009 ACGGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATTAACGATTGCA 66068 || |||||||| ||||||||||| || ||| ||||||||||| || | | |||||| Sbjct 5296 ACAGCATAACCTGAAACACGGATTGTCAGTGTAGGATATTTTTCAGGGTGTTCCATTGCA 5237 Query 66069 TCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACCTTCAACA 66125 || ||| || | || || ||||| || || || ||||||||||| ||||| ||| Sbjct 5236 TCGAGCAGTGTTTCTCTGTTGAGAACGTTCACATTCAGATGCTGACCGCCTTCTACA 5180 >seq3941 Length=8044 Score = 96.9 bits (106), Expect = 4e-15 Identities = 197/293 (67%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||| || | ||| |||||| ||| | ||| | | || | |||||| ||||| Sbjct 1060 CCGTGTGTCAAATGTCCGCCGTGGTCAAGATTCATTCCCATTACAGTATCACCGGGCTTT 1119 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 | | || | ||| ||| || || || | || ||||| || ||||| || | Sbjct 1120 AATACCGCAAACTGAACCGCCATATTAGCCTGAGCCCCTGAATGTGGCTGAACATTAACA 1179 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 | | || | ||||||||| || || | ||| ||||| | ||| | ||||| | Sbjct 1180 TATTCACAGCCAAACAGTTCCTTTGCTCTCTCTCGTGCCAATTCCTCTACAACATCGACC 1239 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177 | ||| |||||||| |||| ||||| ||||| ||||| || ||||||||||| | | Sbjct 1240 TCCTGGCATCCGCCATAGTACCTCTTGCCAGGATAGCCCTCGGCGTACTTGTTGGTGAGA 1299 Query 7178 ATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGGACGCAAT 7230 ||||| ||| |||| ||||||| | ||||| ||||||| || || || Sbjct 1300 ATAGAGCCCATTGCTGACATAACAGCAGGGGACACCCAGTTTTCAGAGGCGAT 1352 >seq2964 Length=2227 Score = 95.1 bits (104), Expect = 1e-14 Identities = 245/366 (67%), Gaps = 8/366 (2%) Strand=Plus/Plus Query 38726 CCTAGATATCCGCAAACACGCCGAATTACCGACATCTTCGAAGAATCATGGTTTCCACAT 38785 || ||||| ||||| ||||| | ||||| || | |||| || |||||| ||| || Sbjct 147 CCCAGATAACCGCACACACGTCTGATTACGGAAACCTTCTCGGAGTCATGGCATCCGCAG 206 Query 38786 GCTGGGCA-ACTAAAGCCTTTTGATGTGCACTTGAATTCGCCATCGTAACCGCAATCATA 38844 || || || ||| ||||| || || |||| |||||||| | |||||| || || Sbjct 207 TTAGGACATACGAAA-CCTTTAGAGGTACACTCAAATTCGCCCTTGTAACCACAGCTGTA 265 Query 38845 GCATTTATCTACGGGCGTGTTTGTGCCGAAATAAGAAAGATTTTCCATCGC-GTAATCCC 38903 ||||| || | || || || || ||| | || | || || || || || |||||||| Sbjct 266 GCATTCGTCAATCGGGGTATTGGTACCGTAGTACGGAACCTTGTC-ATAGCTGTAATCCC 324 Query 38904 ATATCTGCTCAAGAGCTTCAATGTTTCTACGCATGTTGGGCAGCTCAACGTAACTGATAT 38963 | | | ||| || || || | || ||||||| || || |||| | |||| Sbjct 325 ACACATCCTCGAGCGCCTCGACATTGTGCTGCATGTTAGGATATTCGCCGTAGCAGATAA 384 Query 38964 GGCCGCCGGAAGCTATCCAATGGAAGTTCTTTTCGAAGTCGATTTTGTCGTACGGGTTAA 39023 |||||| | || | | ||||| ||||||||||||| || | || |||| Sbjct 385 AACCGCCGCTTGACATTGCAGGATAGTTCATTTCGAAGTCGATCTTCGCATAAGGGT--C 442 Query 39024 GTTCGGCTTC--AACAGGCACGTGGAAGCTATTGGTATACCAATCTTTATCCGTAACACC 39081 | | | ||| |||| || |||||| || |||||||| | |||| || |||||||| Sbjct 443 GACCTGTTTCTGAACATCCAAGTGGAAACTGTTGGTATAGTAGCCTTTGTCGGTAACACC 502 Query 39082 TGGGAT 39087 || || Sbjct 503 CGGAAT 508 >seq2941 Length=2426 Score = 82.4 bits (90), Expect = 8e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 65386 CCCTATTGGATTCGAACCAATGACCAACGACTTAGAACGACGTTGCTCTGTCCAGCTGAG 65445 |||||| ||||||||||| |||||| ||| ||||||| | ||||||||| |||||||||| Sbjct 2277 CCCTATAGGATTCGAACCTATGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAG 2336 Query 65446 CTAAG 65450 | ||| Sbjct 2337 CCAAG 2341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555327802538040