Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq2964 277 3e-69 seq3152 89.7 8e-13 seq30 89.7 8e-13 seq3706 87.8 3e-12 seq4090 86.0 9e-12 seq124 86.0 9e-12 >seq2964 Length=2227 Score = 277 bits (306), Expect = 3e-69 Identities = 824/1256 (66%), Gaps = 20/1256 (2%) Strand=Plus/Plus Query 37630 TCATGCAGGCCGATATAGCCGATACTGACAGAAGCGCGTCCATT-TTCAAATGCTTTCAT 37688 ||||| | |||||||| || | | || || || || || || || ||| ||| || Sbjct 714 TCATGAATACCGATATAACCCAGAGATACGGACGCACGCCCGTTCTTGAAAATCTTGGAT 773 Query 37689 GATATCGTCATCTGGATTCAGACGTACACCGCAGGCGCCTTCGACGTAAAGAATCGGAGC 37748 ||||| || || | || || || ||||||||||| || || | ||| || ||||| || Sbjct 774 -ATATCCTCGTCAGCCTTAAGGCGGACACCGCAGGCACCCTCCATGTAGAGGATCGGGGC 832 Query 37749 CACGCTTGCCTTAACGCCACGCAGACGATCAACACGTACCATTAGAGCTTGTTTAACTAC 37808 ||| | |||||| || || |||||| ||| ||| || || || | || | Sbjct 833 CACACGTGCCTTCACACCGTCCAGACGGGCAATACGGCACAGCAGCGCCTTCTTGCAGAT 892 Query 37809 TTCCATACGCTCTTCCAGAAGCTCCCAGAAACGCATATGATTGCCGTTTGCGTCGAGTGC 37868 | || ||| || | || | || |||| | | || || || || || | || Sbjct 893 GTTCAGACGTTCACCGAGGATCTTGTAGAATTTGGTCTCATCCCCCTTGGCCTCAATGGC 952 Query 37869 GATACGCGGCAGATTCAGAGTAACAACCCCTAGATTATTACGACCTTCGTGAACTTCATT 37928 |||||| |||||||||||| | || || || ||||| ||||| || ||||| | | | Sbjct 953 GATACGAGGCAGATTCAGACTTACCACACCCAGATTGTTACGGCCGTCGTGGATCTGAAC 1012 Query 37929 GCCATTTTCGTCTTCCCAACGATGCAAGAAACT-GCGGCATCCCATAGGGAACTTAAAGC 37987 || || || || | ||| || || || |||||| ||||| || ||| || Sbjct 1013 ACCGTTCTCCTCAT----ACGGGGCGAGGAATGAGCGGCAGCCCATCGGAGTCTTGAATG 1068 Query 37988 TGCCAGTTGTTTCAACAACTTTATCATAACTCAGAATATCTGGATACATACGCTTAGAAG 38047 || || | ||||| | ||| || |||||||||| |||||||| | ||| || | Sbjct 1069 AACCGGTAACCTTCACAACCTGATCGTAGTTCAGAATATCCGGATACATTCTCTTGGAGG 1128 Query 38048 CGCACTCCAGTGCCAGTTGCTTGATACGATAAAGCGGGTCAGTTGGCTTCAAGTTGTGTC 38107 |||| || || ||||| | ||||||| || || ||| || ||| ||| Sbjct 1129 CGCATTCAAGAGCCAGCTTCTTGATATCGTAGTTAGGATCACCCTCTTTACGGTTCAGTC 1188 Query 38108 CGTCTTTCAGAGCAAACACCAGTTTCGGGAACACCGGAGTGATACCCTCTTTGCCAAGTC 38167 | || || | ||||||||||| || ||||| |||| ||| | | ||| || | Sbjct 1189 CCTCCTTGATGGCAAACACCAGCTTAGGGAAAACCGCAGTTCTGTGATTGCGGCCGAGAC 1248 Query 38168 CAGCCAGTCGAACTTTCAAGATCGCTTCCTGAATCAGTTCAGCTTCCCAGCTTTCACCCA 38227 |||| | || |||| || | | ||| ||||| | |||||| | |||| Sbjct 1249 CAGCAATTCTGTTCTTCAGAATAGACTTCTGGATCAGACGTGACTCCCAGGATGTTCCCA 1308 Query 38228 GACCAAAGCCGAATGTACAGAAGGGAGTTTGACCGTTCGCGGAGTGAAGAGTGTTCACCT 38287 |||| || |||| || ||| ||||| |||||||| | || || || ||||| || | Sbjct 1309 GACCGAAACCGAGAGTTACGAACGGAGTCTGACCGTTGGAGGTATGCAGGGTGTTTACTT 1368 Query 38288 CGTATTCGAGTCCCTGCATTGCATCATA-CACAGCTTTGTGAGTCTTTGCAATAGCGTAT 38346 | ||||| || ||| | || ||||| ||| |||| | ||| || || | Sbjct 1369 CATATTCAAGAGACTGGAAGGCGTCATAGCACTCCTTT-TCAGTACGGGCTCGGGCAAAG 1427 Query 38347 TCTTTCGCATCTGGAATTTTCCAAT-AACGGGCTTCGTCCAAATGCTTTTCATG--AGTC 38403 | || ||| ||||| | ||| | ||| | || | | || | |||||| | || Sbjct 1428 CTGTCCGGATCAGGAATGTGCCACTCCTCGGCCATC-TTCTGATAC--TTCATGAAACTC 1484 Query 38404 ATCTTAACATACGGTGCCAGCACTTCGTCAATACGATTAATTGTGTTGCCGCCGTAAATG 38463 | |||||||||| || ||||| || ||| || || || || | |||||||| || Sbjct 1485 TTGGTAACATACGGGGCAAGCACCTCATCACAGCGGTTGATGGTTGTACCGCCGTAGATA 1544 Query 38464 TGACTTGCTACTTGCGCAATAATCTGAGCGACTACGGCAGCAGCGGTAGAAATGCTTTTC 38523 || || || || || || || ||||| ||| || || | |||||| || || Sbjct 1545 TGGCTGGCAACCTGGGCGATGATCTGTGCGGTAACCGCGGTTGCGGTACTGATTGACTTA 1604 Query 38524 GGAGTTTCGATCTGTGCATTTCCCATACGGAACCCGCGATCTAACATGCCTTTGACATCT 38583 || | |||||| | ||||| ||||| ||| ||||| || | ||| || |||||| Sbjct 1605 GGTGATTCGATTTCGGCATTACCCATCTTGAAACCGCGTTCCAGCATTCCGCCGACATCG 1664 Query 38584 ATCAACATGCAGTTAAACATTGGGAAGAATGGAGAATAGTCAAGATCATGGAAGTGCAGC 38643 |||| ||| ||||| ||||| |||||||| || |||||||| ||||| || || || | | Sbjct 1665 ATCAGCATACAGTTGAACATCGGGAAGAACGGTGAATAGTCGAGATCGTGAAAATGGATC 1724 Query 38644 CAGCCTTTTTCGTGTGCTTGCATAACTTCAACAGGAAG---ATAATGCTTTGCAAAGT-G 38699 ||| |||| || ||| || |||||| |||||| | || |||||| ||| | Sbjct 1725 TCCCCTCTTTCATGGGCTCTCACAACTTCCTGAGGAAGCATGTGCTGTTTTGCATAGTGG 1784 Query 38700 CTTACTAACAATACCAGCAACCAGATCGCGTTGAGTAGGGATTACTTTAGCGTCTTTGTT 38759 | | | ||||||||| |||| || || || || || || || || || ||| ||||| Sbjct 1785 CGTGC-AACAATACCTGCAAGAAGGTCACGCTGGGTCGGAATAACCTTGCTGTCCTTGTT 1843 Query 38760 AGCATTCTCATTCATGATGCCTTCATCTTCCTGCTTCATCAGTCCCATGATACGCTTGGT 38819 |||||||| || | | || ||| | ||| | ||||||||| |||| || | | Sbjct 1844 GGCATTCTCGTTAAGCAGATCTGCATTTGACTGATCGATCAGTCCCTTGATCTCCTGGCT 1903 Query 38820 CATGTCGCTGTTCAAGTCGCGAGCAACGTCACGATCATAGCGGTATTCGATGTAGG 38875 || ||| ||| || || | ||| | |||| |||||| ||||| |||| Sbjct 1904 CAGAGCGCCTTTCTTTTCACGCAGACGGTCTCTTTCATGGCGGTACTCGATATAGG 1959 >seq3152 Length=23011 Score = 89.7 bits (98), Expect = 8e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 110501 GAAAATGGGACTCGAACCCACGACCCCCAGCTTGCAAGGCTAGTGCTCTCCCATCTGAGC 110560 ||||| ||| ||| ||||| |||||||||||||| |||||||||||||| || |||||| Sbjct 2626 GAAAACGGGGCTCAAACCCGCGACCCCCAGCTTGGAAGGCTAGTGCTCTATCAACTGAGC 2567 Query 110561 TATTTCCCCAAA 110572 ||||||| |||| Sbjct 2566 TATTTCCGCAAA 2555 >seq30 Length=31791 Score = 89.7 bits (98), Expect = 8e-13 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 110483 AACTTTAAATTTGGTGGAGAAAATGGGACTCGAACCCACGACCCCCAGCTTGCAAGGCTA 110542 ||||| |||| || | ||||| ||| ||| ||||| |||||||||||||| ||||||| Sbjct 23120 AACTTGAAAT--GGAGCGGAAAACGGGGCTCAAACCCGCGACCCCCAGCTTGGAAGGCTA 23177 Query 110543 GTGCTCTCCCATCTGAGCTATTTCCCCA 110570 ||||||| || ||||||||||||| || Sbjct 23178 GTGCTCTATCAACTGAGCTATTTCCGCA 23205 >seq3706 Length=88543 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 108211 GCGAGTGGTGGATTTGAACCACCGACCTTTAGCTTATGAGGCTAACGAGATACCGGACTT 108270 ||| | || ||||||||||||||||||||| | ||||||| | |||||| ||||||||| Sbjct 6155 GCGGGGGGCGGATTTGAACCACCGACCTTTGGGTTATGAGCCCAACGAGCTACCGGACTG 6214 Query 108271 CTCCAACTCGCATCAT 108286 ||||| | |||||||| Sbjct 6215 CTCCACCCCGCATCAT 6230 >seq4090 Length=21464 Score = 86.0 bits (94), Expect = 9e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 110501 GAAAATGGGACTCGAACCCACGACCCCCAGCTTGCAAGGCTAGTGCTCTCCCATCTGAGC 110560 ||||| ||| ||| ||||| |||||||||||||| |||||||||||||| || |||||| Sbjct 457 GAAAACGGGGCTCAAACCCGCGACCCCCAGCTTGGAAGGCTAGTGCTCTATCAACTGAGC 398 Query 110561 TATTTCC 110567 ||||||| Sbjct 397 TATTTCC 391 >seq124 Length=48292 Score = 86.0 bits (94), Expect = 9e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 110501 GAAAATGGGACTCGAACCCACGACCCCCAGCTTGCAAGGCTAGTGCTCTCCCATCTGAGC 110560 ||||| ||| ||| ||||| |||||||||||||| |||||||||||||| || |||||| Sbjct 46836 GAAAACGGGGCTCAAACCCGCGACCCCCAGCTTGGAAGGCTAGTGCTCTATCAACTGAGC 46895 Query 110561 TATTTCCCCA 110570 ||||||| || Sbjct 46896 TATTTCCGCA 46905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746173237751760