Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq4258 86.0 6e-12 seq3162 84.2 2e-11 >seq4258 Length=48503 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 99639 CTGCACGGCCGCGTAGATGTTCTGGAGGCTGGGCGGGATCGGAACGCCGCGGTTCACGCT 99698 |||||| || | |||||||||| || |||||||| || | |||| ||||||||| Sbjct 35565 CTGCACCTCCTTGAAGATGTTCTGTAGCGAGGGCGGGAAGGGGATGCCGTCGTTCACGCT 35506 Query 99699 GAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGAC 99758 |||| || ||||||||||| ||| | | || || ||||| || || ||||||||||| Sbjct 35505 GAAGCAGAGTCCGTGGGCCTGTCCGGGTCCATGATAAGGGTCTTGCCCGAGGATGACGAC 35446 >seq3162 Length=19082 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/223 (70%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 99544 CGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCAG-GCCTCCAGGCA 99602 || |||||||||| || ||||||||||||||| || | || |||||| | || ||| Sbjct 13673 CGGACGGTGAGCGTGGCGTTGAGCAGCAGCACACCCTGACGGGCCCAGCGGCT-GAGGTC 13615 Query 99603 GCCGTGCTGCGGCCGCGGGGTCCCGGGGAAGTTCTTCTGCACGGCCGCGTAGATGTTCTG 99662 ||||| ||||||| ||| || || || || || | | || | |||||||||| Sbjct 13614 GCCGTTCTGCGGCACCGGTGTGCC---GAGGTCCTGTTCAATCTCCTTGAAGATGTTCTG 13558 Query 99663 GAGGCTGGGCGGGATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGCCC 99722 || ||||| | || ||||| | | ||| ||| ||| || || ||||| || Sbjct 13557 CAGCGACGGCGGAAAGGGCACGCCCGGCTGCACCGAGAAACTCAGCCCATGTGCCTGGCC 13498 Query 99723 GTGGCT-GTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 |||| || ||||||||||| || | |||||| ||||| || Sbjct 13497 -CGGCTCATGATAGGGGTCCTGCCCGATGATGACCACCTTCAC 13456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440871098187240