Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= NC_005856.1
Length=94800
Score E
Sequences producing significant alignments: (Bits) Value
seq2604 145 5e-30
seq1930 104 1e-17
seq218 95.1 7e-15
>seq2604
Length=13895
Score = 145 bits (160), Expect = 5e-30
Identities = 255/364 (70%), Gaps = 8/364 (2%)
Strand=Plus/Minus
Query 72231 TATAAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCAACTTATGCGCGTC 72290
|||| ||| ||||||| | || ||| | |||||||| || || ||||| ||| ||
Sbjct 4833 TATAGGGAACATGGTGGAGTAAGTATGGTGATGATCGATTATCTTCAACTGATGAAGTTC 4774
Query 72291 CCCGAGCTGCAAGATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCG 72350
|| | || || || | || ||||| || ||||| | | |||| ||
Sbjct 4773 CCAGGTTATGAAAATGACAAACAGCATGAAATCAGTGAAATTTCCGGTGCGTTGAAA-CG 4715
Query 72351 T-TGGCGAAGGAATTACAAGTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGA 72409
| | ||||| ||||| | || ||||| | || ||||| || | |||||| | ||
Sbjct 4714 TATAGCGAAAGAATTTGATGTTCCGGTAATTGCCTTGTCTCAGTTAAATCGAGGATTAGA 4655
Query 72410 ACAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCA 72469
|||| | | || ||| ||||| | ||||||||| | ||||||||||| || ||||| ||
Sbjct 4654 ACAGAGAACTGAAAAAAGACCGATGAATTCAGATCTTCGTGAATCAGGCGCCATTGAACA 4595
Query 72470 GGACGCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAA-- 72527
||| || ||| | || |||||| | ||||| || ||||| ||||| |||||| | ||
Sbjct 4594 GGATGCTGACGTTATAATGTTTATATATCGTGATGAAGTGTATCATCCGGAT-TCAAAGG 4536
Query 72528 ATGAAGGGCATT-GCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGT 72586
|| |||| ||| |||||||||||||| ||||| || |||| || || || || || ||
Sbjct 4535 ATAAAGG--ATTGGCCGAGGTAATTATAGGAAAACAGAGAAACGGTCCTATCGGAACTGT 4478
Query 72587 GAGA 72590
|||
Sbjct 4477 CAGA 4474
>seq1930
Length=79289
Score = 104 bits (114), Expect = 1e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 9189 TCGTTATAGACGAATCCATCTTTACCCGTATTGTATGGTGGGTCAATGTAAATCATATTC 9248
|||||||||||||||||||| |||| ||||||||||| |||||||| ||||| ||
Sbjct 66512 TCGTTATAGACGAATCCATCGCTACCTGTATTGTATGGCGGGTCAATATAAATGCACTTT 66571
Query 9249 ACCTTTTCAGCATAAGCATTAACCATATGCTTCAATACTTCGAGGTTATCCCCTTTGATT 9308
||||| ||||||| | || | | ||| |||| | |||||||| || || ||||
Sbjct 66572 ACCTTGCCAGCATACGATTTCAGAAGATGTTTCAGCGCGTCGAGGTTGTCACCACTGATG 66631
Query 9309 AACAGGTTTTGACTGTTCTTGTTCTCT 9335
| | ||| | |||| ||||||||||
Sbjct 66632 TAAATGTTCTCGCTGTCCTTGTTCTCT 66658
>seq218
Length=12344
Score = 95.1 bits (104), Expect = 7e-15
Identities = 133/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 8847 TTAGCGTATACATATATATATTCATGCGTATCTGAAAAGCCAAAGTTATCATGATTGCCT 8906
||||| || || | |||||||||| || | | ||| || | | || |||||||||
Sbjct 11460 TTAGCATAAACCAACGTATATTCATGTGTTCCAGCAAATCCGTACTCGTCTTGATTGCCT 11519
Query 8907 TTGAGATTCATGATTGTAGGGAGTTTTGCAACAAAATTACCTTGCCCAAATACTTCGTCG 8966
|| | |||||| || || || || |||||||||||||| |||| |||| || ||| |||
Sbjct 11520 TTCAAATTCATTATGGTGGGTAGGTTTGCAACAAAATTCTCTTGACCAATTATTTCATCG 11579
Query 8967 CATAATAATCCCAACTGTTTATCTTCGTTATCGTCTATGGAGATGAATATTACTCCATCC 9026
|| || | ||| | | | |||||||||||||| || || || || | |||
Sbjct 11580 CAAGTCAACCTCAAATCCATCTGCTCGTTATCGTCTATTGAAATAAAAATGAAACCAGAA 11639
Query 9027 TCTTTTA 9033
|||||||
Sbjct 11640 TCTTTTA 11646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 303216355732779
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |