Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq2604 145 5e-30 seq1930 104 1e-17 seq218 95.1 7e-15 >seq2604 Length=13895 Score = 145 bits (160), Expect = 5e-30 Identities = 255/364 (70%), Gaps = 8/364 (2%) Strand=Plus/Minus Query 72231 TATAAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCAACTTATGCGCGTC 72290 |||| ||| ||||||| | || ||| | |||||||| || || ||||| ||| || Sbjct 4833 TATAGGGAACATGGTGGAGTAAGTATGGTGATGATCGATTATCTTCAACTGATGAAGTTC 4774 Query 72291 CCCGAGCTGCAAGATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCG 72350 || | || || || | || ||||| || ||||| | | |||| || Sbjct 4773 CCAGGTTATGAAAATGACAAACAGCATGAAATCAGTGAAATTTCCGGTGCGTTGAAA-CG 4715 Query 72351 T-TGGCGAAGGAATTACAAGTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGA 72409 | | ||||| ||||| | || ||||| | || ||||| || | |||||| | || Sbjct 4714 TATAGCGAAAGAATTTGATGTTCCGGTAATTGCCTTGTCTCAGTTAAATCGAGGATTAGA 4655 Query 72410 ACAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCA 72469 |||| | | || ||| ||||| | ||||||||| | ||||||||||| || ||||| || Sbjct 4654 ACAGAGAACTGAAAAAAGACCGATGAATTCAGATCTTCGTGAATCAGGCGCCATTGAACA 4595 Query 72470 GGACGCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAA-- 72527 ||| || ||| | || |||||| | ||||| || ||||| ||||| |||||| | || Sbjct 4594 GGATGCTGACGTTATAATGTTTATATATCGTGATGAAGTGTATCATCCGGAT-TCAAAGG 4536 Query 72528 ATGAAGGGCATT-GCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGT 72586 || |||| ||| |||||||||||||| ||||| || |||| || || || || || || Sbjct 4535 ATAAAGG--ATTGGCCGAGGTAATTATAGGAAAACAGAGAAACGGTCCTATCGGAACTGT 4478 Query 72587 GAGA 72590 ||| Sbjct 4477 CAGA 4474 >seq1930 Length=79289 Score = 104 bits (114), Expect = 1e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 9189 TCGTTATAGACGAATCCATCTTTACCCGTATTGTATGGTGGGTCAATGTAAATCATATTC 9248 |||||||||||||||||||| |||| ||||||||||| |||||||| ||||| || Sbjct 66512 TCGTTATAGACGAATCCATCGCTACCTGTATTGTATGGCGGGTCAATATAAATGCACTTT 66571 Query 9249 ACCTTTTCAGCATAAGCATTAACCATATGCTTCAATACTTCGAGGTTATCCCCTTTGATT 9308 ||||| ||||||| | || | | ||| |||| | |||||||| || || |||| Sbjct 66572 ACCTTGCCAGCATACGATTTCAGAAGATGTTTCAGCGCGTCGAGGTTGTCACCACTGATG 66631 Query 9309 AACAGGTTTTGACTGTTCTTGTTCTCT 9335 | | ||| | |||| |||||||||| Sbjct 66632 TAAATGTTCTCGCTGTCCTTGTTCTCT 66658 >seq218 Length=12344 Score = 95.1 bits (104), Expect = 7e-15 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 8847 TTAGCGTATACATATATATATTCATGCGTATCTGAAAAGCCAAAGTTATCATGATTGCCT 8906 ||||| || || | |||||||||| || | | ||| || | | || ||||||||| Sbjct 11460 TTAGCATAAACCAACGTATATTCATGTGTTCCAGCAAATCCGTACTCGTCTTGATTGCCT 11519 Query 8907 TTGAGATTCATGATTGTAGGGAGTTTTGCAACAAAATTACCTTGCCCAAATACTTCGTCG 8966 || | |||||| || || || || |||||||||||||| |||| |||| || ||| ||| Sbjct 11520 TTCAAATTCATTATGGTGGGTAGGTTTGCAACAAAATTCTCTTGACCAATTATTTCATCG 11579 Query 8967 CATAATAATCCCAACTGTTTATCTTCGTTATCGTCTATGGAGATGAATATTACTCCATCC 9026 || || | ||| | | | |||||||||||||| || || || || | ||| Sbjct 11580 CAAGTCAACCTCAAATCCATCTGCTCGTTATCGTCTATTGAAATAAAAATGAAACCAGAA 11639 Query 9027 TCTTTTA 9033 ||||||| Sbjct 11640 TCTTTTA 11646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303216355732779