Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq356 87.8 2e-12 seq4722 86.0 8e-12 seq3720 86.0 8e-12 seq2507 86.0 8e-12 seq3952 84.2 3e-11 seq1731 84.2 3e-11 seq3711 82.4 1e-10 >seq356 Length=4283 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 165218 TTGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGT-GAATTAAT-TCG 165275 ||||||||||||||||||||||||||||||| | || ||| | ||| | | ||| ||| Sbjct 3691 TTGCCCAAGTGGCGGAATTGGTAGACGCGCTAGTTTCAGGGACTAGTGGCAGCAATGTCG 3632 Query 165276 TGGAGGTTCAAGTCCTCTCTTGGGCAC 165302 || |||||| |||||| |||||||||| Sbjct 3631 TGCAGGTTCGAGTCCTGTCTTGGGCAC 3605 >seq4722 Length=5870 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 164733 GGGGAATTAGCTCAGTTGGTAGTAGCGTTTGCTTTGCAAGCAAAATGTCAGGAGTTCGAG 164792 |||| ||||||||||||||||| |||||||| | ||| ||||| ||||||||||||| Sbjct 4729 GGGGTATTAGCTCAGTTGGTAG-AGCGTTTGAATGGCATTCAAAAGGTCAGGAGTTCGAT 4787 Query 164793 TCTCCTATTCTCCA 164806 |||||||| ||||| Sbjct 4788 TCTCCTATGCTCCA 4801 >seq3720 Length=41887 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 164733 GGGGAATTAGCTCAGTTGGTAGTAGCGTTTGCTTTGCAAGCAAAATGTCAGGAGTTCGAG 164792 |||| ||||||||||||||||| |||||||| | ||| ||||| ||||||||||||| Sbjct 37683 GGGGTATTAGCTCAGTTGGTAG-AGCGTTTGAATGGCATTCAAAAGGTCAGGAGTTCGAT 37741 Query 164793 TCTCCTATTCTCCA 164806 |||||||| ||||| Sbjct 37742 TCTCCTATGCTCCA 37755 >seq2507 Length=7850 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 164733 GGGGAATTAGCTCAGTTGGTAGTAGCGTTTGCTTTGCAAGCAAAATGTCAGGAGTTCGAG 164792 |||| ||||||||||||||||| |||||||| | ||| ||||| ||||||||||||| Sbjct 427 GGGGTATTAGCTCAGTTGGTAG-AGCGTTTGAATGGCATTCAAAAGGTCAGGAGTTCGAT 369 Query 164793 TCTCCTATTCTCCA 164806 |||||||| ||||| Sbjct 368 TCTCCTATGCTCCA 355 >seq3952 Length=6226 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/87 (83%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 120232 AAACAC--AACGGGGTGTAGCTCAGTTTGG-TAGAGCACTCGCTTTGGGAGCGAGTGGCC 120288 |||||| | |||||||| ||||||||||| |||||||| | ||||||| | | || | Sbjct 1014 AAACACCTATCGGGGTGTGGCTCAGTTTGGCTAGAGCACCTGGTTTGGGACCAGGGGGTC 955 Query 120289 GTAGGTTCGAATCCTATCACCCCGATT 120315 | ||||||||||||| ||||||||||| Sbjct 954 GCAGGTTCGAATCCTGTCACCCCGATT 928 >seq1731 Length=76336 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/96 (82%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 120240 CGGGGTGTAGCTCAGTTTGG-TAGAGCACTCGCTTTGGGAGCGAGTGGCCGTAGGTTCGA 120298 |||||||| ||||||||||| |||||||| | ||||||| | | || || |||||||| Sbjct 59001 CGGGGTGTGGCTCAGTTTGGCTAGAGCACCTGGTTTGGGACCAGGGGGTCGCAGGTTCGA 59060 Query 120299 ATCCTATCACCCCGA-TTAGTGAAATATATATATTA 120333 ||||| ||||||||| ||| |||||| ||| |||| Sbjct 59061 ATCCTGTCACCCCGACTTA--GAAATAAATA-ATTA 59093 >seq3711 Length=63627 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 164481 TAGCTCAGTTGGATAGAGCAACGCTTTTGTAAAGCGTAGGTCGTCGGTTCGAGTCCGACC 164540 |||||||||||| ||||||||||| || |||| ||||||||||| |||||||||||||| Sbjct 13530 TAGCTCAGTTGG-TAGAGCAACGCATTCGTAATGCGTAGGTCGTTGGTTCGAGTCCGACA 13588 Query 164541 TTGGGCT 164547 | |||| Sbjct 13589 TGTGGCT 13595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627927974889600