Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq3055 176 7e-39 seq4039 116 6e-21 seq3176 116 6e-21 seq398 114 2e-20 seq33 95.1 2e-14 >seq3055 Length=40296 Score = 176 bits (194), Expect = 7e-39 Identities = 376/557 (68%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 193635 GTTGAACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAG 193694 ||| | ||| ||||||| ||||| |||| || |||||||||||| |||| |||||| Sbjct 838 GTTAAGCCTACTGAGATTTATAACCTTGCAGCCCAAAGTCATGTTCAAGTAAGCTTTGAT 897 Query 193695 ATGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTT 193754 || ||||||||| | | |||||||| || | | | | | || || || Sbjct 898 TCACCGGAGTATACTGCAGACGTTGATGCGACTGGTGTTTTACGTGTTTTAGAGGCTGTA 957 Query 193755 CGTATGTTGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTAT 193814 ||| | ||| |||||||||| ||| || ||||| |||||||| ||||| ||| Sbjct 958 CGTGCTTGTGGATTGGAGAAAGACTGTCGTATATATCAAGCATCTACATCAGAACTTTAT 1017 Query 193815 GGTGGTGTTCTAG--GCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTT 193872 || || || | | || || |||| |||||||| |||||| ||||| | Sbjct 1018 GGCAAAGTGGAAGAAGTGCCTCAGAATGAGAAT--ACACCATTCCATCCATATTCTCCAT 1075 Query 193873 ATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGG-A 193931 ||| || || ||||||||||||| ||||| | ||| | ||||||||| | ||||| | Sbjct 1076 ATGCGGTTGCTAAGTTGTATGGTTTCTGGATTGTTAAGGAGTATCGTGAGGCCTATGGTA 1135 Query 193932 TTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTT 193991 | ||| ||||||| ||||| ||||| || || ||| |||| | |||||||| ||| Sbjct 1136 TGTTCTGCT-GTTCTGGAATTCTTTTCAACCATGAGTCTGAAAGACGTGGTGAGACTTTT 1194 Query 193992 GTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTT 194051 || || | || || || | | | || || || ||| ||| | | | Sbjct 1195 GTTACAAGGAAAATCACGCTGGCAGCAGCTCGCATAGCTCAGGGAAAACAAGATAAATTG 1254 Query 194052 TATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCG 194111 ||| | || ||||| | | | | ||||||||| |||| |||||||||||||| Sbjct 1255 TATTTGGGAAATCTGTCTAGTTTGCGTGATTGGGGATACGCCAAGGATTATGTTGAGTGT 1314 Query 194112 ATGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAG 194171 |||||| | || | || | || |||| || || | ||| ||||||||||||| || Sbjct 1315 ATGTGGCTTATTCTTCAGAATGAAAAACCTGAGGACTTTGTCATTGCTACAGGTGTTCAA 1374 Query 194172 TATTCTGTTAGAGACTT 194188 | |||||| | ||||| Sbjct 1375 CACTCTGTTCGTGACTT 1391 >seq4039 Length=95413 Score = 116 bits (128), Expect = 6e-21 Identities = 253/370 (68%), Gaps = 14/370 (4%) Strand=Plus/Minus Query 193647 GAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTAT 193706 ||||| ||||| || | ||||||||| || || ||||| || ||||| | ||||| ||| Sbjct 43734 GAGATATATAACCTGGCTGCTCAAAGCCACGTCAAAGTGTCATTTGATGTACCAGAATAT 43675 Query 193707 ACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGGA 193766 || | | ||||| ||| || || | | || || || ||||| | ||| Sbjct 43674 ACAGCAGACACCGATGCCAATGGAGTACTGCGATTGTTGGAGGCTGTCCGTATCTGCGGA 43615 Query 193767 ATGGA-GAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGTTCT 193825 ||| || | ||| |||||||| ||||| || || |||||| || ||| || | Sbjct 43614 CTGGCCGACACATGC-CGCATCTACCAGGCCTCCACTTCCGAACTTTACGGTAAGGTAC- 43557 Query 193826 AGGCACT-CCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAA 193884 ||| | | |||| | || || || || || |||| || |||||||||| || || | Sbjct 43556 AGGAAGTGCCACAAAGCGAGACAACCCCGTTCTATCCCCGTTCTCCTTATGCCGTGGCCA 43497 Query 193885 AGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTC-----ATATGGATTCCACGC 193939 | | || |||| |||||||| ||||| ||||||||||| ||||| ||| || Sbjct 43496 AACTCTACGGTTTCTGGATCATGAAGAACTATCGTGAGTCCTACAATATG--TTC--TGC 43441 Query 193940 TAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCG 193999 | | ||||| |||||||||||||| | | | |||||||| || ||||| || Sbjct 43440 T-GCAACGGTATCCTCTTCAATCACGAGAGTGAGCGTCGCGGTGAGACCTTCGTAACCCG 43382 Query 194000 TAAGATTACA 194009 ||||||||| Sbjct 43381 CAAGATTACA 43372 >seq3176 Length=15124 Score = 116 bits (128), Expect = 6e-21 Identities = 347/528 (66%), Gaps = 8/528 (2%) Strand=Plus/Minus Query 193645 CTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGT 193704 |||| ||||||||||||| || || |||||||| || || || || || | || || | Sbjct 2100 CTGAAATCTATAATCTTGCAGCCCAGAGTCATGTCAAGGTATCGTTCGACGTTCCTGAAT 2041 Query 193705 ATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGG 193764 |||| | | |||||| | || | | | || || || || || || | | Sbjct 2040 ATACAGCCGACACTGATGCCGTCGGCGTGTTGCGCCTGCTGGAGGCTGTGCGCATATGCG 1981 Query 193765 GAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGTTC 193824 || |||| ||| | |||||||||||||| || |||||||| ||| ||| || | Sbjct 1980 GATTGGAAAAATCTTGCCGCATCTATCAGGCCTCAACCAGCGAGTTGTTTGG-ACTGGTA 1922 Query 193825 TAGGCA-CTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCA 193883 ||| | ||| | ||||| ||||||||| ||||||| || || || || || ||| Sbjct 1921 CAGGAAGTTCCTCAGAGCGAAACAACACCATTTTATCCACGTTCACCCTACGGCGTTGCA 1862 Query 193884 AAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATG-GATTCCACGCTAG 193942 ||| | ||||| | ||||| || ||||| || ||||| || |||| || ||| | Sbjct 1861 AAGCTCTATGGATTCTGGATTATGAAGAACTACCGTGAATCCTATGACATGTTCTGCT-G 1803 Query 193943 TTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAA 194002 || ||| | ||||| || || | | |||| || || ||||| |||||||| Sbjct 1802 CAACGGCATTTTGTTCAACCATGAGAGCGAACGGCGAGGGGAAACCTTTGTCACTCGTAA 1743 Query 194003 GATTACACAAG--GTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGT 194060 || || | | | | | | | | || | ||| | | || ||||| || Sbjct 1742 AATCACGTTGGCAGCTGCCCGCATAGCCC--AAGGTTATCAGGACAAGCTCTATCTCGGC 1685 Query 194061 AATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTA 194120 || || ||||| | || ||||| | ||||| ||||| || || |||||| | Sbjct 1684 AACCTCAATGCCCTACGCGACTGGGGCTATGCAAAAGATTACGTGGAGTGCATGTGGCTT 1625 Query 194121 ATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAA 194168 || |||| ||| |||||| || |||| ||| |||||||| |||||| Sbjct 1624 ATCCTGCAGCAGCCTGAACCTGACGATTTTGTCATTGCTACTGGTGAA 1577 >seq398 Length=3443 Score = 114 bits (126), Expect = 2e-20 Identities = 255/383 (67%), Gaps = 0/383 (0%) Strand=Plus/Minus Query 193782 CGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGTTCTAGGCACTCCACTATCA 193841 ||| |||||||||| || || |||||| ||| ||| || | || || |||| | Sbjct 2958 CGCTTCTATCAGGCCTCGACAAGCGAATTGTTTGGCAAAGTACAAGAGACACCACAAAGC 2899 Query 193842 GAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGG 193901 |||||||||||||| |||| ||||| || || | || ||||| | || || |||||| Sbjct 2898 GAAACCACACCATTCTATCCTCGCTCGCCATACGCAGTTGCAAAACTATACGGCTATTGG 2839 Query 193902 ATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCAAT 193961 || | || ||||| || | || | | ||| | ||| || |||||||| Sbjct 2838 ATAACAGTCAACTATCGCGAAGCCTACAAAATGTTTGCTTGCAATGGCATACTCTTCAAC 2779 Query 193962 CACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCT 194021 |||||| || | | |||| || ||||| ||||| |||||||| |||| | | || | Sbjct 2778 CACGAAAGCCCCATACGAGGCGAAACATTCGTAACACGTAAGATCACACGCGCTGTAGCC 2719 Query 194022 AAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAATGCTAAGAGGGAT 194081 | || | | || || | | || || || || || || | | || | || Sbjct 2718 AGAATTGCACTCCATTTGCAAGATAAGCTCTACCTCGGCAACCTATCTTCAAAACGCGAC 2659 Query 194082 TGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCC 194141 |||||||| || || || || ||| | || |||||| || |||||||| | || ||| Sbjct 2658 TGGGGACATGCCAAAGACTACGTTCAGGCAATGTGGCACATCTTGCAACAAAACGAGCCC 2599 Query 194142 GATGATTATGTGATTGCTACAGG 194164 || || | || ||||| ||||| Sbjct 2598 GAAGACTTCGTTATTGCAACAGG 2576 >seq33 Length=27562 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 193842 GAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGG 193901 |||| || ||||| |||||| |||||| || | ||||||||| | || ||||||||| Sbjct 8486 GAAAATACCCCATTCCATCCATACTCTCCATACGCTGTAGCAAAACTTTACGGTTATTGG 8545 Query 193902 ATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCAAT 193961 || || ||| | || | ||| | || | | | | |||||||||| | ||||| Sbjct 8546 ATAATAAAGGAATACAGAGAGGCTTACGATATGTTCTGTTGTTCTGGTATATTGTTCAAC 8605 Query 193962 CACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTAC 194008 || ||||| | | |||||||||| || ||||| ||||||||||| Sbjct 8606 CATGAATCAGAACGTCGAGGTGAGACGTTCGTAACCCGTAAGATTAC 8652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807503728450440