Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq143 131 2e-25 seq2085 114 1e-20 seq1923 104 3e-17 seq4574 100 3e-16 seq2794 100 3e-16 seq2964 95.1 1e-14 seq2701 95.1 1e-14 seq3941 91.5 2e-13 seq212 89.7 6e-13 seq2941 82.4 8e-11 >seq143 Length=132465 Score = 131 bits (144), Expect = 2e-25 Identities = 508/775 (66%), Gaps = 40/775 (5%) Strand=Plus/Plus Query 6469 AGCTTCACCGAAGCAAATAGCCTTTGCCGCGATAACATGCATTAACGGACCACCCTGAAT 6528 ||| || ||||| |||| ||| || | || ||||| || |||||||| || ||| | Sbjct 18320 AGCCTCGCCGAAACAAACAGCTTTACCGGCTATAACGTGTTCCAACGGACCGCCTTGAGT 18379 Query 6529 ACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAG 6588 ||||| || | | ||||| || || || || ||||| | || ||| || | ||| | Sbjct 18380 TCCCGGAAATACGGATGAATTAACCTTTTTTGCAATATCCGGATTGTTGGTTAAAATCAT 18439 Query 6589 ACCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGAAGTAACAACGTCAGCACCCCA 6648 || || ||||| |||||||||||||| || ||||| | ||||||| || ||| | Sbjct 18440 TCCGCCGCGAGGCCCGCGCAAAGTTTTGTGTGTTGTGGTGGTAACAATATCGGCAAA--A 18497 Query 6649 TTTGAGTGGATTAGCATGAAGTTTTGATGCGACGAATCCAGCAAAGTGGGCCATATCGAC 6708 | | | ||||| | || | || || || || |||||||| |||||||| || Sbjct 18498 TCTAAC-GGATTCGGGTGTTCACCGGCCGCCACCAAGCCTGCAAAGTGAGCCATATCAAC 18556 Query 6709 CATCAACTTCGCGCC-AGACATATCAGCAATGCTGCGAA-GTGCTGAATAATCCATCTCA 6766 ||| || | ||||| | || | || ||||| |||| | ||| || | || || || Sbjct 18557 CATTAAGTATGCGCCTATAC-TGTCGGCAATTTCACGAAAGCGCTTAA-AGTCTAT-TCG 18613 Query 6767 TCTAATTGGTGGACGAAGGCTGAATAACCAACGACAATCAATTTGAGATTCGGGATAGAT 6826 | | ||| |||||||| || || |||| | | || ||||| || || Sbjct 18614 GC------GCGGAT--AGGCTGAA---CCGCCGGCAATAA---TCAGTTTCGGTTTATAT 18659 Query 6827 T---TAGCGATTTCGCG-AATTTTGAAAAGATCCAAATGACCGTAGGCATCG---ACACC 6879 | | || || ||| || | | || ||| | | || | | | | || || Sbjct 18660 TCTTTTGCTATA-CGCTCAACCTCGGCAAAATCAATCAGTCCATCGTCTTTTTTAACTCC 18718 Query 6880 GTAATG-ATGGAAGTCGTAATTG--CGGCCTGACGCATTTGCTTTATGC-CCATGTGTTA 6935 || || | ||| | |||| | || ||| | | |||| ||| || || |||| Sbjct 18719 ATATTGCACGGATTTAAAAATTTTTCCGCTTGAGGAAA---CTTT-TGCACCGTGCGTTA 18774 Query 6936 AATGACCACCGCAATCCAAAGACATCGCCAATACTGAATCGCCTGGACTCAGCAACGCAT 6995 ||||||||||| ||| ||| ||| ||| | | ||| || | ||||| | || Sbjct 18775 AATGACCACCGGCATCTAAACTCATGCCCATGATAGTATCACCGGCACTCAAAAGTGCCA 18834 Query 6996 GGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAAT-TGCAA 7054 | |||||||| ||||| || |||||||| || ||||| || | || | ||| | Sbjct 18835 GATAAACAGCCATATTTGCTTGGCTGCCGGAATGAGGCTGAACATTAACAAATTCTGC-A 18893 Query 7055 CTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGCTTTTACACAA 7114 |||| |||| ||| || |||||||||||||| || || |||||||| | | || Sbjct 18894 TTAAAAAGTTTTTTTGCGCGCTCAATTGCCAGATTTTCAATCTCATCAATAAATTCGCAC 18953 Query 7115 CCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCT 7174 |||| ||||| || | | ||||| || || ||||| ||||| || | ||| || ||| Sbjct 18954 CCGCAATAATAGCGGTGAGCCGGATAACCTTCGGCATATTTGTTTGTCAGAATTGACCCT 19013 Query 7175 TGCGCTTTCATAACATCATCGGACACATAGTTTTCGGATGCAATCAAGCAAACTT 7229 ||||||| ||| || || || ||| ||||| || ||||| || ||||| Sbjct 19014 TGCGCTTCCATTACCGCACGCGATACAATATTTTCCGAGGCAATTAATTCAACTT 19068 >seq2085 Length=24988 Score = 114 bits (126), Expect = 1e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 6466 AAGAGCTTCACCGAAGCAAATAGCCTTTGCCGCGATAACATGCATTAACGGACCACCCTG 6525 ||| || ||||||||||||| ||||| ||||||||| ||||| | |||||| ||||| Sbjct 20193 AAGCGCCTCACCGAAGCAAACCGCCTTGCCCGCGATAATGTGCATAAGCGGACCGCCCTG 20252 Query 6526 AATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAAT 6585 | |||||||||| ||||| ||||| | ||||| || | | || ||||| || || || Sbjct 20253 AGTACCCGGGAAAATAGCGGAATTAATCTTCTTTGCAAGCGCGGCGTCGTTCGTGAGGAT 20312 Query 6586 GAGACCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGAAGTAACAACGTCAGCA 6643 | || || | || || || | || ||||| ||||| | ||||| ||||| ||| Sbjct 20313 TAAGCCTCCCCTCGGACCTCGAAGGGTCTTATGGGTTGTCGTTGTAACTACGTCCGCA 20370 >seq1923 Length=163503 Score = 104 bits (114), Expect = 3e-17 Identities = 153/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 6999 AAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAATT--GCAACT 7056 ||||||| || ||||||| ||| ||||| || |||||||| || | ||| || | Sbjct 39448 AAACAGCCGCATTAGCCTGTGCACCAGAATGTGGCTGAACGTTGGC-ATATTCAGCGCCG 39506 Query 7057 AAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGCTTTTACACAACC 7116 || ||||||| | | || ||||| | ||||| | | ||| | || | || || Sbjct 39507 AAGAGTTTCTTTA-CTCTTTCTATTGCGATAGTCTCGGTTTGATCCACAATTTCGCACCC 39565 Query 7117 GCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCTTG 7176 ||| ||||| |||||||| |||||||| || ||||||||||| |||| ||||| || Sbjct 39566 GCCATAATAACGTTTGCCAGGATATCCTTCCGCATACTTGTTAGTAAGGCATGAACCCTG 39625 Query 7177 CGCTTTCATAACATCATCGGACACATAGTTTTC 7209 |||| |||||| | ||| ||||||||||| Sbjct 39626 TGCTTCCATAACTTGGTCGCTGACATAGTTTTC 39658 >seq4574 Length=31120 Score = 100 bits (110), Expect = 3e-16 Identities = 153/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 7010 TTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAATT-GCAACTAAACAGTTCTTT 7068 ||||| || | ||||| || || ||||| || |||||||| || | ||| |||||||| Sbjct 18954 TTTGCTTGCGCGCCGGAGTGCGGCTGAACATTGGCGAAATTTGCGCCGAAA-AGTTCTTT 19012 Query 7069 AGCACGCTCAATTGCCAGGTT-CTCGATCTCATCGGCTTTTACACAACCGCCGTAATACC 7127 || | ||||| || || || ||| | ||| | | | ||| ||||||||||||| Sbjct 19013 GGCTCTGTCAATCGC-AGTTTGCTCAACTATATCAACATATTTACAGCCGCCGTAATACC 19071 Query 7128 GTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCTTGCGCTTTCATAA 7187 ||| || |||||| || ||||| || ||| || | ||||||||||||| ||||| Sbjct 19072 TTTTTCCGCTATATCCTTCGGCATATTTAAGGGTTAATACTGAACCTTGCGCTTGCATAA 19131 Query 7188 CATCATCGGACACATAGTTTTCGGATGCAATCA 7220 | | | || ||| ||||| |||||||||| Sbjct 19132 CTGCCTTAGATACAATATTTTCAGATGCAATCA 19164 >seq2794 Length=4126 Score = 100 bits (110), Expect = 3e-16 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 6997 GTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCG-AAATTGCAAC 7055 ||||||||| || ||||| ||||| ||||| || ||||| || || ||| |||| | Sbjct 3408 GTAAACAGCAGCATTGGCCTGAGAACCTGAATGAGGCTGAACATTGGCATAAACTGCACC 3467 Query 7056 TAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGCTTTTACACAAC 7115 || ||| | || || | |||||||| || | || | | ||| | | | |||||| Sbjct 3468 GAA-CAGCTGCTTTGCTCTTTCAATTGCAAGAGTTTCAACTTTATCAACATATTCACAAC 3526 Query 7116 CGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCTT 7175 |||| || || | ||||| ||||| || |||||||| |||||||| | || || | Sbjct 3527 CGCCATAGTATCTCTTGCCAGGATAACCTTCAGCATATTTGTTGGTCAGCTGGGATCCCT 3586 Query 7176 GCGCTTTCATAACATCATCGGACA--CATAGTTTTCGGATGCAATCA 7220 | |||| |||||| | |||| | |||||||||||||| |||| Sbjct 3587 GAGCTTCCATAACGCGA--GGACTTGCGTAGTTTTCGGATGCGATCA 3631 >seq2964 Length=2227 Score = 95.1 bits (104), Expect = 1e-14 Identities = 245/366 (67%), Gaps = 8/366 (2%) Strand=Plus/Plus Query 38379 CCTAGATATCCGCAAACACGCCGAATTACCGACATCTTCGAAGAATCATGGTTTCCACAT 38438 || ||||| ||||| ||||| | ||||| || | |||| || |||||| ||| || Sbjct 147 CCCAGATAACCGCACACACGTCTGATTACGGAAACCTTCTCGGAGTCATGGCATCCGCAG 206 Query 38439 GCTGGGCA-ACTAAAGCCTTTTGATGTGCACTTGAATTCGCCATCGTAACCGCAATCATA 38497 || || || ||| ||||| || || |||| |||||||| | |||||| || || Sbjct 207 TTAGGACATACGAAA-CCTTTAGAGGTACACTCAAATTCGCCCTTGTAACCACAGCTGTA 265 Query 38498 GCATTTATCTACGGGCGTGTTTGTGCCGAAATAAGAAAGATTTTCCATCGC-GTAATCCC 38556 ||||| || | || || || || ||| | || | || || || || || |||||||| Sbjct 266 GCATTCGTCAATCGGGGTATTGGTACCGTAGTACGGAACCTTGTC-ATAGCTGTAATCCC 324 Query 38557 ATATCTGCTCAAGAGCTTCAATGTTTCTACGCATGTTGGGCAGCTCAACGTAACTGATAT 38616 | | | ||| || || || | || ||||||| || || |||| | |||| Sbjct 325 ACACATCCTCGAGCGCCTCGACATTGTGCTGCATGTTAGGATATTCGCCGTAGCAGATAA 384 Query 38617 GGCCGCCGGAAGCTATCCAATGGAAGTTCTTTTCGAAGTCGATTTTGTCGTACGGGTTAA 38676 |||||| | || | | ||||| ||||||||||||| || | || |||| Sbjct 385 AACCGCCGCTTGACATTGCAGGATAGTTCATTTCGAAGTCGATCTTCGCATAAGGGT--C 442 Query 38677 GTTCGGCTTC--AACAGGCACGTGGAAGCTATTGGTATACCAATCTTTATCCGTAACACC 38734 | | | ||| |||| || |||||| || |||||||| | |||| || |||||||| Sbjct 443 GACCTGTTTCTGAACATCCAAGTGGAAACTGTTGGTATAGTAGCCTTTGTCGGTAACACC 502 Query 38735 TGGGAT 38740 || || Sbjct 503 CGGAAT 508 >seq2701 Length=6067 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 65598 TGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGT 65657 || |||||||||| || | || ||| | || || || ||||| | || || ||| Sbjct 5356 TGAGTGAAAGTTCTTGTTACAACATCCTGCTGCTGTTCTTTGGTTAAAGAGTTGAAACGT 5297 Query 65658 ACGGCATAGCCGGAAACACGGATGGTTAGCTGGGGATATTTTTCTGGATTAACGATTGCA 65717 || ||||| || ||||||||||| || || ||||||||||| || | | |||||| Sbjct 5296 ACAGCATAACCTGAAACACGGATTGTCAGTGTAGGATATTTTTCAGGGTGTTCCATTGCA 5237 Query 65718 TCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACCTTCAACA 65774 || ||| || | || || ||||| || || || ||||||||||| ||||| ||| Sbjct 5236 TCGAGCAGTGTTTCTCTGTTGAGAACGTTCACATTCAGATGCTGACCGCCTTCTACA 5180 >seq3941 Length=8044 Score = 91.5 bits (100), Expect = 2e-13 Identities = 196/293 (67%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 6926 CCATGTGTTAAATGACCACCGCAATCCAAAGACATCGCCAATACTGAATCGCCTGGACTC 6985 || ||||| ||||| || ||| || | | ||| ||| ||| | ||| || || | Sbjct 1060 CCGTGTGTCAAATGTCCGCCGTGGTCAAGATTCATTCCCATTACAGTATCACCGGGCTTT 1119 Query 6986 AGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCG 7045 | | |||| | ||| || || ||||| | || ||||| || ||||| || | Sbjct 1120 AATACCGCAAACTGAACCGCCATATTAGCCTGAGCCCCTGAATGTGGCTGAACATTAACA 1179 Query 7046 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGCT 7105 | | || | ||||||||| || || | ||| ||||| | ||| | ||||| | Sbjct 1180 TATTCACAGCCAAACAGTTCCTTTGCTCTCTCTCGTGCCAATTCCTCTACAACATCGACC 1239 Query 7106 TTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAAA 7165 | || ||||| || |||| ||||| ||||| ||||| || ||||||||||| | | Sbjct 1240 TCCTGGCATCCGCCATAGTACCTCTTGCCAGGATAGCCCTCGGCGTACTTGTTGGTGAGA 1299 Query 7166 ATAGAACCTTGCGCTTTCATAACATCATCGGACACATAGTTTTCGGATGCAAT 7218 ||||| || ||| ||||||| || |||||| ||||||| || || || Sbjct 1300 ATAGAGCCCATTGCTGACATAACAGCAGGGGACACCCAGTTTTCAGAGGCGAT 1352 >seq212 Length=12858 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 7001 ACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAAT-TGCAACTAAA 7059 || ||| ||| || |||| || || |||||||| ||||| || || | ||| | | Sbjct 12368 ACTGCTGCGTTGGCTTGTGCGCCAGAGTGGGGTTGCACGTTGGCAAATTCTGCCCCGTAC 12427 Query 7060 CAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGCTTTTACACAACCGCC 7119 | ||||||| | || || || || ||| |||| | || || | | | |||||||| Sbjct 12428 AACTTCTTTA-CGCGTTCTATGGCGAGGGTCTCCACTTCGTCTACGACTTCGCAACCGCC 12486 Query 7120 GTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCTTGCGC 7179 ||||| |||||||| ||||| || || ||||| ||||| |||| | || || || Sbjct 12487 GTAATGACGTTTGCCAGGATAGCCTTCGGCATATTTGTTAGTAAGACACGAGCCCATTGC 12546 Query 7180 TTTCATAACATCATCGGACACATAGTTTTCGGATGCAATCA 7220 || ||| || || ||| ||| |||| ||||| || |||| Sbjct 12547 TTGCATTACTTCGTCGCTGACAAAGTTCTCGGAAGCTATCA 12587 >seq2941 Length=2426 Score = 82.4 bits (90), Expect = 8e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 65035 CCCTATTGGATTCGAACCAATGACCAACGACTTAGAACGACGTTGCTCTGTCCAGCTGAG 65094 |||||| ||||||||||| |||||| ||| ||||||| | ||||||||| |||||||||| Sbjct 2277 CCCTATAGGATTCGAACCTATGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAG 2336 Query 65095 CTAAG 65099 | ||| Sbjct 2337 CCAAG 2341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553318330624920