Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_007056.1 Length=45286 Score E Sequences producing significant alignments: (Bits) Value seq4950 199 1e-46 seq4905 176 1e-39 seq3712 165 2e-36 seq4931 129 2e-25 seq3788 96.9 1e-15 seq4942 95.1 4e-15 seq2 89.7 1e-13 >seq4950 Length=5026 Score = 199 bits (220), Expect = 1e-46 Identities = 412/603 (68%), Gaps = 24/603 (4%) Strand=Plus/Minus Query 28521 TTGCCTTGTTTTTCAGGATTACTTATTTTCCACTCTTTTGCAGTCATACCAAACAACGCG 28580 || |||| ||| | ||||| | || ||| |||||||||||||| ||||| ||||| Sbjct 4848 TTTCCTTTTTTGCCGGGATTGTTCTTTCGCCATTCTTTTGCAGTCATTCCAAATAACGCC 4789 Query 28581 ACATTTAATAAATCGGCTTCTGTAGCATATGTATAACCGATTTGTTGTTTTGT-TAA-CT 28638 || || | ||||| ||||| ||||| || ||||| | | || ||| || Sbjct 4788 ACGTTCAGCAAATCAGCTTCGTCGGCATAAACGAAA--GATTTTTGGGCAGGTGTAAGCT 4731 Query 28639 TTGAATTAATTAAATTTTCTTTTATAGCATCAGTGAGAATAGTATAATTAGATTTACTTA 28698 || | |||| |||||||| || ||||| ||| | || | ||||| || |||| Sbjct 4730 CTGGGATTATTAGGTTTTCTTTAATGGCATCGGTGTGGATTTTGTAATT-GAG---CTTA 4675 Query 28699 TAAAA----CGTTTAACATCCCAATTTATACGTTCAGGGTCATTTTCTTGTTCTTTTAAT 28754 ||| || |||| || ||| |||| | | |||||| | |||||| Sbjct 4674 GAAAGTTCCCGGTTAAGATTCCAGTTTAATGAAAGACGAGAATTTTCATCGGACTTTAAT 4615 Query 28755 CTTTGGTAATCTTGAATAATATACAGTTTGAACTCTGGAGAAATCCAACTAGCGAATTCA 28814 ||| | ||||||| || ||||| || | || || ||||||| ||| | || ||| Sbjct 4614 CTTCGATAATCTTTCATTATATAAAGCTGAAATTCAGGAGAAAGCCAGGTTGCAAATGAC 4555 Query 28815 AATGCTATATCTTTATGAGCATAAGT---CCCTCCATATCGTCCGGATTTAGAAGTTATA 28871 | |||||||||| |||| ||| |||| ||||||||| || || | ||| || ||| Sbjct 4554 ATTGCTATATCTGTATGTGCAAAAGTACCCCCTCCATAACGGCCAGCTTTTGAGACAATA 4495 Query 28872 CCTATAGCTTTAGTTGTTTCAATCCATTTTTTAGGAGTTAGGACAAAGCTATTCGATCCG 28931 ||||| || || || |||||||||||| | ||||| | ||||| | || | || Sbjct 4494 CCTATTGCATTTGTCTGTTCAATCCATTTAGTTGGAGTCATAACAAAACGGTTTGCACCA 4435 Query 28932 GCTTGATTTTTAACCGCCTCGAATTCGACACGGTTAAAATTAGAATTGTTTATATCTTCC 28991 |||| ||||||||||| ||||||| |||||||||||| | | ||| | || | |||| Sbjct 4434 GCTTCATTTTTAACCGTGTCGAATTGCACACGGTTAAAACTTGGATTATGTAAAGTTTCC 4375 Query 28992 CAAACTCCTAAAAACTCTATGGTACTTCTCGAACGTAACCAGTTTTGAATTAAAAATCTT 29051 ||||| || | ||| ||||| ||| | | || | |||||| ||||||| ||| | | Sbjct 4374 CAAACCCCAAGAAATTCTATAGTATTACGATTTCGCATCCAGTTCTGAATTACAAAACGT 4315 Query 29052 GGGTTTTCAGAGTCCTT---ATATTTTGCTATATCTGTTAAACTGATGTAATCATCATTT 29108 || ||| || || ||||||||| ||||| || || ||| ||| | |||||| Sbjct 4314 GG---ATCATCTTCATTACGATATTTTGCAATATCAGT--AAGCGATATAAAC-TCATTT 4261 Query 29109 TCA 29111 ||| Sbjct 4260 TCA 4258 >seq4905 Length=11933 Score = 176 bits (194), Expect = 1e-39 Identities = 398/592 (67%), Gaps = 15/592 (3%) Strand=Plus/Plus Query 28521 TTGCCTTGTTTTTCAGGATTACTTATTT-TCCACTCTTTTGCAGTCATACCAAACAACGC 28579 ||||||| ||| | ||||| || ||| |||| ||||||||||| | ||||| | || Sbjct 11122 TTGCCTTTTTTCTTTGGATT-CTCGTTTCTCCATTCTTTTGCAGTTTTTCCAAAAAGTGC 11180 Query 28580 GACATTTAATAAATCGGCTTCTGTAGCATATGTATAACCGATTTGTTGTTTTGTTAACTT 28639 || || ||||| || ||||| ||||| || |||| ||| || | || Sbjct 11181 AACGTTCAATAAGTCTGCTTCGTCTGCATAAACGAAAGATTTTTGCTGTAGCGTAAGCTC 11240 Query 28640 TGAATTAATTAAA--TTTTCTTTTATAGCATCAGTGAGAATAGTATAATTAGATTTACTT 28697 | || | ||| ||||||||||| || || || ||||| |||||| |||| Sbjct 11241 --ATTTGGTAAAAGATTTTCTTTTATTGCGTCGGTATGAATACGATAATTCAATTTTGAA 11298 Query 28698 ATAAAACGTTTAACATCCCAATTTATACGTTCAGGGTCATTTTCTTGTTCTTTTAATCTT 28757 | || |||| || ||| |||| | | | ||||| | ||| | || | Sbjct 11299 AGTTCGCGGTTAAGATTCCAGTTTAAAGAAAGACGACTGTTTTCATCGGATTTAAGTCGT 11358 Query 28758 TGGTAATCTTGAATAATATACAGTTTGAACTCTGGAGAAATCCAACTAGCGAATTCAAAT 28817 |||||||| |||||||||| | || || || || | |||| | || || | | Sbjct 11359 CTGTAATCTTTCATAATATACAACTGAAATTCAGGTGAGAGCCAAGTTGCAAAAGACATT 11418 Query 28818 GCTATATCTTTATGAGCATAAGTCCCTCC---ATATCGTCCGGATTTAGAAGTTATACCT 28874 |||||||| |||||||| |||| || || ||| || || ||||||||| ||||| Sbjct 11419 GCTATATCACTATGAGCAAAAGTTCCACCGCCATAACGACCAGATTTAGAAACAATACCG 11478 Query 28875 ATAGCTTTAGTTGTTTCAATCCATTTTTTAGGAGTTAGGACAAAGCTATTCGATCCGGCT 28934 ||||| || || ||| ||||||||| ||||||| | ||||| | || | ||| ||| Sbjct 11479 ATAGCATTCATTTGTTCTATCCATTTTGTAGGAGTCATTACAAAACGGTTTGCTCCAGCT 11538 Query 28935 TGATTTTTAACCGCCTCGAATTCGACACGGTTAAAATTAGAATTGTTTATATCTTCCCAA 28994 | ||||||||||| ||||||| ||||||||||||| || ||| | || | |||||| Sbjct 11539 TCATTTTTAACCGTGTCGAATTGCACACGGTTAAAATCAGGATTATGTAAAGTTTCCCAC 11598 Query 28995 ACTCCTAAAAACTCTATGGTACTTCTCGAACGTAACCAGTTTTGAATTAAAAATCTTGGG 29054 || || | || || || ||| | | | | |||||||||||| | ||| | || Sbjct 11599 ACACCAAGGAATTCAATTGTATTGCGATTTCTCATCCAGTTTTGAATAACAAAGCGAGG- 11657 Query 29055 TTTTCAGAGTCCTT---ATATTTTGCTATATCTGTTAAACTGATGTAATCAT 29103 ||| || || |||||| || |||||||||||| || || |||| Sbjct 11658 --ATCATCTTCATTTCGATATTTGGCAATATCTGTTAAAGAAATATATTCAT 11707 >seq3712 Length=63247 Score = 165 bits (182), Expect = 2e-36 Identities = 244/343 (71%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 28748 TTTTAATCTTTGGTAATCTTGAATAATATACAGTTTGAACTCTGGAGAAATCCAACTAGC 28807 |||||||||||| ||||||| ||| ||||| || || |||||||||||||||||| || Sbjct 31807 TTTTAATCTTTGATAATCTTTAATGATATAAAGCTTAAACTCTGGAGAAATCCAAGATGC 31866 Query 28808 GAATTCAAATGCTATATCTTTATGAGCATAAGTCCCTCCATATCGTCCGGATTTAGAAGT 28867 |||||||| || ||||| | ||| || ||| ||||||| || ||| ||||| Sbjct 31867 AAATTCAAAAGCAATATCCTGATGTGCCATAGTTGAAGCATATCGGCCTTGTTTTGAAGT 31926 Query 28868 TATACCTATAGCTTTAGTTGTTTCAATCCATTTTTTAGGAGTTAGGACAAAGCTATTCGA 28927 || || || || ||||| || ||||| ||| || ||||| ||||||||||| | Sbjct 31927 CATTCCGATGGCAGATGTTGTATCTATCCAACGTTTGGGTGTTAGAACAAAGCTATTAAA 31986 Query 28928 TCCGGCTTGATTTTTAACCGCCTCGAATTCGACACGGTTAAAATTAGAATTGTTTATATC 28987 ||| |||| | || || ||||||||||||| | || ||||| | ||| | | ||| Sbjct 31987 TCCAGCTTCTTCTTCAATTGCCTCGAATTCGAGGCAATTGAAATTTGGATTATGGA-ATC 32045 Query 28988 -TTCCCAAACTCCTAAAAACTCTATGGTACTTCTCGAACGTAACCAGTTTTGAATTAAAA 29046 |||||||| || | ||| | ||| |||| | | ||||||||| || | | Sbjct 32046 GTTCCCAAAGACCGAGAAAACGGACTGTATTTCTGTTTCTCATCCAGTTTTGTATAACAT 32105 Query 29047 ATCTTGGGTTTTCAGAGTCCTTATATTTTGCTATATCTGTTAA 29089 ||| || ||||| | |||||||| || ||||| ||||| Sbjct 32106 ATCCCGGATTTTCGGTTGTTTTATATTTGGCGATATCAGTTAA 32148 >seq4931 Length=8154 Score = 129 bits (142), Expect = 2e-25 Identities = 213/305 (70%), Gaps = 2/305 (1%) Strand=Plus/Plus Query 28740 TCTTGTTCTTTTAATCTTTGGTAATCTTGAATAATATACAGTTTGAACTCTGGAGAAATC 28799 |||| ||| |||| | ||| | |||| || ||| | || || || ||||||| Sbjct 1678 TCTTCTTCCTTTAGCCGCTGGAATTCTTTTGCAACATATAATTCAAATTCAACAGAAATC 1737 Query 28800 CAACTAGCGAATTCAAATGCTATATCTTTATGAGCATAAGTCCCTCCATATCGTCCGGAT 28859 ||||| || |||| ||| || ||||||||||| || ||||| || || || || || || Sbjct 1738 CAACTTGCAAATTTAAAGGCGATATCTTTATGCGCGTAAGTTCCGCCGTAGCGACCAGAC 1797 Query 28860 TTAGAAGTTATACCTATAGCTTTAGTTGTTTCAATCCATTTTTTAGGAGTTAG-GACAAA 28918 || ||| ||| || || || || ||||||||||||| ||||| || | ||| Sbjct 1798 TTTGAAACTATTCCGATTGCCCCTGTACTTTCAATCCATTTGGAAGGAGAAAGTGTAAAA 1857 Query 28919 GCTATTCGATCCGGCTTGATTTTTAACCGCCTCGAATTCGACACGGTTAAAATTAGAATT 28978 || |||| | || |||| ||||||| | |||||||||||| | ||||||| || ||| Sbjct 1858 GC-ATTCAAGCCAGCTTCTTTTTTAAACCCCTCGAATTCGAGGGGTTTAAAATCAGGATT 1916 Query 28979 GTTTATATCTTCCCAAACTCCTAAAAACTCTATGGTACTTCTCGAACGTAACCAGTTTTG 29038 | || | |||||||| ||| | | | || || || | | ||| | ||||||| Sbjct 1917 ATATAAACTTTCCCAAATTCCGAGATATTCAATCGTGTTGCGGTTACGAAGCCAGTTTGC 1976 Query 29039 AATTA 29043 ||||| Sbjct 1977 AATTA 1981 >seq3788 Length=26699 Score = 96.9 bits (106), Expect = 1e-15 Identities = 187/276 (68%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 28740 TCTTGTTCTTTTAATCTTTGGTAATCTTGAATAATATACAGTTTGAACTCTGGAGAAATC 28799 |||| ||||| | | |||| | || | || | ||| | ||||||||||| ||| Sbjct 26545 TCTTCATCTTTCAGACGTTGGAACTCACGTATCAGATATACCTTGAACTCTGGGCTTATC 26486 Query 28800 CAACTAGCGAATTCAAATGCTATATCTTTATGAGCATAAGTCCCTCCATATCGTCCGGAT 28859 || | || || ||||| || || ||||| || |||||||| || ||||| || || | Sbjct 26485 CACATGGCAAACTCAAAGGCAATGTCTTTGTGGGCATAAGTGCCACCATAACGCCCTGCC 26426 Query 28860 TTAGAAGTTATACCTATAGCTTTAGTTGTTTCAATCCATTTTTTAGGAGTTAGGACAAAG 28919 || || | ||||| || || ||||| |||| |||| | ||||| | | || || Sbjct 26425 TTTGAGATAATACCGATGGCATTAGTCTTTTCTGTCCACTCTTTAGCACTGAGACGGAAA 26366 Query 28920 CTATTCGATCCGGCTTGATTTTTAACCGCCTCGAATTCGACACGGTTAAAATTAGAATTG 28979 | ||| | || || ||| ||||| ||||||||| ||| |||||||| | ||| Sbjct 26365 CGGTTCAACCCTGCCTGAGATTTAATTATGTCGAATTCGGCACAATTAAAATTCGGATTC 26306 Query 28980 TTTATATCTTCCCAAACTCCTAAAAACTCTATGGTA 29015 | | ||||| | ||| | |||||||||||| Sbjct 26305 ATCAACCGCTCCCATATTCCAAGGAACTCTATGGTA 26270 >seq4942 Length=6395 Score = 95.1 bits (104), Expect = 4e-15 Identities = 189/276 (68%), Gaps = 7/276 (3%) Strand=Plus/Plus Query 28771 TAATATACAGTTTGAACTCTGGAGAAATCCAACTAGCGAATTCAAATGCTATATCTTTAT 28830 ||||||| || || || ||||| |||| |||| ||| ||||| ||||||||||| || Sbjct 5521 TAATATAAAGCTTAAATTCTGGTGAAAGCCAAGAAGCAAATTCTAATGCTATATCGGAAT 5580 Query 28831 GAGCATAAGT---CCCTCCATATCGTCCGGATTTAGAAGTTATACCTATAGCTTTAGTTG 28887 | ||| || | |||||||| ||||| ||||| | | || ||| | | | | Sbjct 5581 GTGCAAAAATTCCACCTCCATAGCGTCCTGATTTTGTAACAATTCCTTTTCCCTGTAATA 5640 Query 28888 TTTCAATCCATTTTTT--AGGAGTTAGGACAAAGCTATTCGATCCGGCTTGATTTTTAAC 28945 |||| |||| ||||| || || | ||||| ||| | |||| | ||||||| Sbjct 5641 CTTCATTCCAGTTTTTGATTGAAAAAGTA-AAAGC-ATTTGTACCGGAATCCTTTTTAAA 5698 Query 28946 CGCCTCGAATTCGACACGGTTAAAATTAGAATTGTTTATATCTTCCCAAACTCCTAAAAA 29005 || ||||||||| ||| ||||||| | ||| | | | |||||||| |||||||| Sbjct 5699 CGTATCGAATTCGCTACGTTTAAAATCGGGATTATGGAGACTTTCCCAAAGACCTAAAAA 5758 Query 29006 CTCTATGGTACTTCTCGAACGTAACCAGTTTTGAAT 29041 || | || ||| ||||||||| | ||||| Sbjct 5759 TTCAACAATATCTCTTCCTCGTAACCAGGTATGAAT 5794 >seq2 Length=178159 Score = 89.7 bits (98), Expect = 1e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 28782 TTGAACTCTGGAGAAATCCAACTAGCGAATTCAAATGCTATATCTTTATGAGCATAAGTC 28841 |||||||| ||| |||||| ||||||||||||| || ||||||||||||||||| ||| Sbjct 53326 TTGAACTCAGGACTAATCCACATAGCGAATTCAAAAGCGATATCTTTATGAGCATAGGTC 53385 Query 28842 CCTCCATATCGTCC 28855 || ||||||| ||| Sbjct 53386 CCGCCATATCTTCC 53399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144784832657024