Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_008207.1 Length=153766 Score E Sequences producing significant alignments: (Bits) Value seq3148 102 8e-17 seq4937 98.7 1e-15 seq1312 98.7 1e-15 seq112 98.7 1e-15 seq1731 96.9 3e-15 seq4079 93.3 4e-14 seq4669 91.5 1e-13 seq3952 91.5 1e-13 seq3314 91.5 1e-13 seq157 91.5 1e-13 seq755 87.8 2e-12 seq3449 84.2 2e-11 seq2324 84.2 2e-11 seq121 82.4 8e-11 seq32 82.4 8e-11 >seq3148 Length=25767 Score = 102 bits (112), Expect = 8e-17 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 112757 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTAC-GTCATGGGCATCACCTC 112815 ||||| |||||||| || | || || |||| ||||| ||| ||||||||||| Sbjct 8019 GGCCCCGGCCGTGGTAGTGCGGCAGGTTCAGTGGTGGCCTACTGTC-TGGGCATCACCAA 8077 Query 112816 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGCCCCGA 112875 |||||||||| | ||||||||||| |||||||||| ||| ||||||| |||||| | Sbjct 8078 GATCGACCCGCTGAAGTACGACCTCCTGTTCGAGCGTTTCCTCAACCCCGACCGCATCTC 8137 Query 112876 CTTCCCCGACATCGACGTCGACTTC 112900 | ||||| |||||| ||||||| Sbjct 8138 GCTGCCCGATATCGACACCGACTTC 8162 Score = 89.7 bits (98), Expect = 5e-13 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 113808 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCC-GCAC-CGCCAAGGAGCTGGC 113865 ||||||| |||||| ||||| ||||||||| |||| | || | ||| | || |||| Sbjct 8977 ACACCTATGGCATCACCGTCTATCAGGAGCAGGTGATGCTGCTCTCGCGAC--AGTTGGC 9034 Query 113866 CGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGA 113925 | ||||||| |||||| ||| || || |||| ||| || ||||||||||| || Sbjct 9035 CAACTTCACCCGTGGCGAGAGCGACGCCCTTCGCAAGGCCATGGGTAAGAAGAAGATTGA 9094 Query 113926 GATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGC 113962 |||| |||||| || |||| ||||| |||| ||| Sbjct 9095 GATCGTCAACGCCATGAAGCCTAAGTTCATCGAGGGC 9131 >seq4937 Length=6770 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 90077 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 90136 |||| ||||| ||| | || || |||||||||||||||||||||||||||||||||||| Sbjct 156 CGGGATGTAGCGCAGCT-GGTAGCGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 98 Query 90137 TCCTGTCACCCCGACT 90152 |||||||| ||||||| Sbjct 97 TCCTGTCATCCCGACT 82 >seq1312 Length=3891 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 112757 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 112816 || || |||||||| || || | ||||| || | ||| | |||||||||| | Sbjct 3108 GGACCTGGCCGTGGGTCGGCAGCAGGCTCCACAGTGGCATACTGCCTGGGCATCACGATG 3167 Query 112817 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGCCCCGAC 112876 | ||||| |||||||||||||| |||||||||| ||| ||||||||||||| | | Sbjct 3168 GTGGACCCCATCAAGTACGACCTCCTGTTCGAGCGATTCCTCAACCCGGACCGTATCTCC 3227 Query 112877 TTCCCCGACATCGACGTCGACTTC 112900 |||| || |||||||| |||||| Sbjct 3228 CTCCCGGATATCGACGTGGACTTC 3251 >seq112 Length=216842 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 112757 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 112816 || || || || ||||| || | || ||| |||| |||| | | |||||||| | Sbjct 52088 GGACCCGGACGAGGCTCGGCAGCCGGTTCGGTGGTGGCCTATTGCCTCGGCATCACACAG 52029 Query 112817 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGCCCCGAC 112876 || |||||| |||||||||||||| |||||||||| ||| |||| || |||||| | | Sbjct 52028 ATAGACCCGCTCAAGTACGACCTGCTGTTCGAGCGGTTCCTCAATCCCGACCGCATCTCC 51969 Query 112877 TTCCCCGACATCGACGTCGACTTC 112900 | ||||| |||||| ||||||| Sbjct 51968 CTGCCCGATATCGACACCGACTTC 51945 >seq1731 Length=76336 Score = 96.9 bits (106), Expect = 3e-15 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 90077 CGGGGTGTAGTTCAGTTTGGA-AGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGA 90135 |||||||| | ||||||||| ||||| | ||||||||||||| | ||||||||||||| Sbjct 59001 CGGGGTGTGGCTCAGTTTGGCTAGAGCACCTGGTTTGGGACCAGGGGGTCGCAGGTTCGA 59060 Query 90136 ATCCTGTCACCCCGACTCAG 90155 ||||||||||||||||| || Sbjct 59061 ATCCTGTCACCCCGACTTAG 59080 >seq4079 Length=28942 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/162 (73%), Gaps = 8/162 (5%) Strand=Plus/Minus Query 113808 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGAT-CCGCAC---CGCCAAGGAGCTG 113863 |||||||||||||| ||||| ||||||||| |||| | || | |||| || || Sbjct 11228 ACACCTACGGCATCACCGTCTATCAGGAGCAGGTGATGCTGCTCTCGCGCC----AGTTG 11173 Query 113864 GCCGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATG 113923 |||| ||||||| |||||| ||| || ||||||| ||| || |||||||||| | Sbjct 11172 GCCGACTTCACCCGCGGCGAGAGCGACGCCCTCCGTAAGGCCATGGGTAAGAAGAAGAAG 11113 Query 113924 GAGATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGCTGC 113965 || ||| || | | || |||||||||| |||| ||| || Sbjct 11112 GACATCGTCGATGCCATGAAGCCCAAGTTCATCGAGGGCGGC 11071 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 112757 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 112816 || || ||||||||||| || | || |||| ||||| | |||||||||| | Sbjct 12186 GGGCCAGGCCGTGGCTCGGCAGCCGGTAGTGTGGTGGCCTACTGCCTGGGCATCACGAAG 12127 Query 112817 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGCCCCGAC 112876 ||||||||| | |||||||||||| |||||||||| ||| | ||||| ||||| | | Sbjct 12126 ATCGACCCGCTGAAGTACGACCTGCTGTTCGAGCGTTTCCTGAACCCCGACCGTATCTCC 12067 Query 112877 TTCCCCGACATCGACGTCGACTTC 112900 | ||||| ||||| ||||||| Sbjct 12066 CTGCCCGATATCGATACCGACTTC 12043 >seq4669 Length=35002 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 112757 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 112816 ||||| ||||| || ||||| | || | ||| | ||| | |||| |||||| Sbjct 6976 GGCCCCGGCCGAGGTTCCGCAGCCGGAAGCGTCGTCGCTTACTGCCTGGGTATCACCAAC 7035 Query 112817 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGC--CCCG 112874 ||||||| |||||||| |||| |||||||||| ||| |||| || |||||| | || Sbjct 7036 CTCGACCCCCTCAAGTACAACCTCCTGTTCGAGCGTTTCCTCAATCCCGACCGCATCTCG 7095 Query 112875 ACTTCCCCGACATCGACGTCGACTTCCAGAA 112905 | | ||||| ||||||||||||||| |||| Sbjct 7096 A--TGCCCGATATCGACGTCGACTTCGAGAA 7124 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/124 (77%), Gaps = 7/124 (6%) Strand=Plus/Plus Query 113805 TGAACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGC---ACCGCCAAGGAGC 113861 |||| |||||||||||| ||||||||||||||| | || | | | | |||| | Sbjct 8067 TGAA-ACCTACGGCATCACCGTCTACCAGGAGCAGGTCATGCTCCTGAGCCGCAAG---C 8122 Query 113862 TGGCCGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGA 113921 | ||||| ||||||| ||||||||||| || || || |||| ||| ||||||||||||| Sbjct 8123 TCGCCGGCTTCACCCGCGGCGAGGCCGACCGCCTCCGCAAGGCCATGGGCAAGAAGAAGA 8182 Query 113922 TGGA 113925 | || Sbjct 8183 TAGA 8186 >seq3952 Length=6226 Score = 91.5 bits (100), Expect = 1e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 90077 CGGGGTGTAGTTCAGTTTGGA-AGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGA 90135 |||||||| | ||||||||| ||||| | ||||||||||||| | ||||||||||||| Sbjct 1004 CGGGGTGTGGCTCAGTTTGGCTAGAGCACCTGGTTTGGGACCAGGGGGTCGCAGGTTCGA 945 Query 90136 ATCCTGTCACCCCGA 90150 ||||||||||||||| Sbjct 944 ATCCTGTCACCCCGA 930 >seq3314 Length=12619 Score = 91.5 bits (100), Expect = 1e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 90076 ACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGA 90135 ||||||||||| ||| || || || | ||||||||||||| | |||||||||||||| Sbjct 12497 ACGGGGTGTAGCGCAGCCCGGTAGCGCACCTGGTTTGGGACCAGGGTGTCGCAGGTTCGA 12556 Query 90136 ATCCTGTCACCCCGACTCAGCGA 90158 |||||||||||||||| ||| || Sbjct 12557 ATCCTGTCACCCCGACGCAGAGA 12579 >seq157 Length=24126 Score = 91.5 bits (100), Expect = 1e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 90077 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 90136 ||||| |||| |||| ||| |||||||||||||||||||||||||||||| ||||||| Sbjct 8202 CGGGGCGTAGCTCAGCCTGGTAGAGCGCTTGGTTTGGGACCAAGATGTCGCGTGTTCGAA 8143 Query 90137 TCCTGTCACCCCGAC 90151 || ||| ||||||| Sbjct 8142 TCTCGTCGCCCCGAC 8128 >seq755 Length=46149 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 112757 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 112816 ||||| ||||| ||| ||||| ||||| | || ||||| | | |||||||| Sbjct 19271 GGCCCTGGCCGAGGCAGCGCCGCCGGCTCCGTCGTAGCCTACTGCCTTCGCATCACCAAC 19212 Query 112817 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGCCCCGAC 112876 | || || ||||||||| | ||| |||||||||| ||| |||||||||||||| | | Sbjct 19211 CTGGATCCAATCAAGTACCAACTGCTGTTCGAGCGTTTCCTCAACCCGGACCGCATCTCC 19152 Query 112877 TTCCCCGACATCGACGTCGACTT 112899 | || || || ||||| ||||| Sbjct 19151 ATGCCGGATATAGACGTGGACTT 19129 >seq3449 Length=4901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 113808 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGC-ACCGCCAAGGAGCTGGCC 113866 |||||||||||||| |||||| ||||||||| |||| | | ||| | |||||||| Sbjct 3945 ACACCTACGGCATCACGGTCTATCAGGAGCAGGTGATGCTCTTGAGCCGA-CAGCTGGCC 3887 Query 113867 GGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGAG 113926 | ||||||| || ||| ||| ||||| |||| || || |||||||||| ||| Sbjct 3886 GACTTCACCCGCGGTGAGAGCGACGCTCTGCGAAAGGCGATGGGTAAGAAGAAGAAGGAC 3827 Query 113927 ATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGCTGCA 113966 ||| | | | || |||| ||||| |||| ||| ||| Sbjct 3826 ATCGTAGATGCCATGAAGCCGAAGTTCATCGAGGGCGGCA 3787 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 112759 CCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCGAT 112818 ||| || ||||| || || | |||||| |||| ||||| | |||||||||| ||| Sbjct 4901 CCCTGGACGTGGTTCGGCTGCCGGCTCGGTGGTGGCCTACTGCTTGGGCATCACGAAGAT 4842 Query 112819 CGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCG 112869 ||||| || |||||||||||| |||| ||||| ||| | || || ||||| Sbjct 4841 AGACCCCATGAAGTACGACCTGCTGTTTGAGCGTTTCCTGAATCCCGACCG 4791 >seq2324 Length=83463 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 112757 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 112816 || ||||| || ||| ||||| || ||| | || | |||| | || |||||||| Sbjct 20382 GGTCCGGGGCGCGGCAGCGCCGCAGGTTCGGTTGTGAGCTACTGCCTGCGCATCACCAAC 20441 Query 112817 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGCCCCGAC 112876 ||||||| || |||||||||| |||||||||| ||| |||| || || | | | Sbjct 20442 CTCGACCCTCTCCGGTACGACCTGCTGTTCGAGCGTTTCCTCAATCCCGAAAGGATCAGC 20501 Query 112877 TTCCCCGACATCGACGTCGACTTC 112900 | |||||||||||||| |||||| Sbjct 20502 ATGCCCGACATCGACGTGGACTTC 20525 >seq121 Length=94419 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 90077 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 90136 |||||||||| |||| || || || | ||||||||||||| | |||||||||||||| Sbjct 445 CGGGGTGTAGCGCAGTCCGGTAGCGCTCCTGGTTTGGGACCAGGCGGTCGCAGGTTCGAA 386 Query 90137 TCCTGTCACCCCGAC 90151 ||||||| ||||||| Sbjct 385 TCCTGTCGCCCCGAC 371 >seq32 Length=28727 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 90077 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 90136 |||||||||| ||||| || || | | ||||||||||||| | |||||||||||||| Sbjct 4523 CGGGGTGTAGCGCAGTT-GGTAGCGTTCCTGGTTTGGGACCAGGCTGTCGCAGGTTCGAG 4465 Query 90137 TCCTGTCACCCCGAC 90151 ||||||||||||||| Sbjct 4464 TCCTGTCACCCCGAC 4450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 491891846045040