Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq3952 91.5 2e-13 seq842 86.0 7e-12 seq4987 82.4 9e-11 seq2941 82.4 9e-11 seq2580 82.4 9e-11 >seq3952 Length=6226 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/84 (85%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 162249 TACTACCTCT--CCTGGGTCAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTC 162306 || ||||||| | || ||||||||||||||||||||||||||| ||||||||||| || Sbjct 770 TAATACCTCTGACATGTGTCAGTAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTG 711 Query 162307 GGTCACAGGTTCGAATCCTGTCTG 162330 |||| ||||||||||| |||| Sbjct 710 GGTCGGGGGTTCGAATCCCTTCTG 687 >seq842 Length=6115 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 162260 CTGGGTCAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCG 162319 |||| || ||||||||||||||||||||||| ||||||||||| || |||| | |||||| Sbjct 851 CTGGTTCCGTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCTCGGGTTCG 792 Query 162320 AATCC 162324 ||||| Sbjct 791 AATCC 787 >seq4987 Length=240000 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 162262 GGGTCAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAA 162321 || |||||||||||||||||||||||||| ||||||||||| || |||| |||||||| Sbjct 27944 GGTTCAGTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCTTGGGTTCGAA 27885 Query 162322 TCC 162324 ||| Sbjct 27884 TCC 27882 >seq2941 Length=2426 Score = 82.4 bits (90), Expect = 9e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 162271 GCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCT 162325 |||||||||||||||||||| ||||||||||| || ||||| ||||||||||||| Sbjct 2337 GCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCATAGGTTCGAATCCT 2283 >seq2580 Length=1271 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 162262 GGGTCAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAA 162321 || || ||||||||||||||||||||||| ||||||||||| || |||| | |||||||| Sbjct 280 GGTTCCGTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCTCGGGTTCGAA 221 Query 162322 TCC 162324 ||| Sbjct 220 TCC 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567195846050400