Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_008515.1 Length=165890 Score E Sequences producing significant alignments: (Bits) Value seq2964 104 2e-17 seq2701 93.3 4e-14 >seq2964 Length=2227 Score = 104 bits (114), Expect = 2e-17 Identities = 507/792 (64%), Gaps = 15/792 (2%) Strand=Plus/Plus Query 41398 AATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 41457 |||||| |||||||| || ||| || || || ||||| |||| ||| ||||| ||||| Sbjct 1103 AATATCCGGATACATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTT 1162 Query 41458 CGGATCGTCTTTATAAAGATTAACGCCTTCTTCAACGAACATAACAAGTTTAGGAAAAAT 41517 ||||| | | | | | || | || || | | | | || || ||||| |||| Sbjct 1163 AGGATCACCCTCTTTACGGTTCAGTCCCTCCTTGATGGCAAACACCAGCTTAGGGAAAAC 1222 Query 41518 AGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAAAATTGCTTTCTGAAT 41577 | |||| | || || || ||||| ||| | || |||| ||| | ||||| || Sbjct 1223 CGCAGTTCTGTGATTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGGAT 1282 Query 41578 CATTCGTTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGAGTCTGTCC 41637 || ||| |||| |||||| ||| || | ||||| || |||||||| || Sbjct 1283 CAGACGTGACTCCCAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGACC 1342 Query 41638 GTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGTC 41697 ||| || || || || ||||||||||||||| || ||||| || || || || Sbjct 1343 GTTGGAGGTATGCAGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCACTC 1402 Query 41698 TTTTTCTGTTTTAGATTGGGCATAATTCAGTGCATCGGCGATTTGCCATTTTTCTG-CGT 41756 ||||| || | | ||||| | | | ||| | || ||||| | || | | | Sbjct 1403 CTTTTCAGTACGGGCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCAT 1462 Query 41757 CCTC-GATATGTTTTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTC 41815 | || |||| | || | | | ||||||| || | ||| || | ||| ||| Sbjct 1463 CTTCTGATACTTCATGAAACTCTTGG--TAACATACGGGGCAAGCACCTCATC-ACAGCG 1519 Query 41816 G-CAAAAGTCGTTCCGCCGTATTGGTGAGAAGCAACCTGTGCGGTAATTTGTGCCATAAT 41874 | | || || |||||||| || |||||||| ||| | || ||||| ||| Sbjct 1520 GTTGATGGTTGTACCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGTAAC 1579 Query 41875 TGCAGTAGCAACGCCAATTGATTTAGGAGTTTCAATCTGCGCATTACCAAGCTTAAATCC 41934 || || || | ||||| ||||| | ||| || | |||||||| | ||| || || Sbjct 1580 CGCGGTTGCGGTACTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAAACC 1639 Query 41935 GTTCTCAAGCATTCCTTTTAAATCTACTAAACA-ACAATTAGTAAAT--GGAAGAGCAGG 41991 | || |||||||| | ||| | | | || ||| || | | || |||||| | || Sbjct 1640 GCGTTCCAGCATTCCGCCGACATCGA-TCAGCATACAGTT-GAACATCGGGAAGAAC-GG 1696 Query 41992 GGAATAATCAATATCATGAAAATGAATAATTCCGCTTTCATGCGCTTTCATAA-TAAAAG 42050 ||||| || | ||| |||||||| || || |||||||| ||| ||| || | | Sbjct 1697 TGAATAGTCGAGATCGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAACTTCCTG 1756 Query 42051 ACG--GGACCTTATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCGTTG 42108 | | | | | | ||| ||| ||| | |||||||| || | |||||| || || Sbjct 1757 AGGAAGCATGTGCTGTTTTGCATAGTGGCGTGCAACAATACCTGCAAGAAGGTCACGCTG 1816 Query 42109 AGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTAAAAGGTCTTTATTAGTTTT 42168 || |||| ||| || || || ||||||||||| | || ||| ||| | | Sbjct 1817 GGTCGGAATAACCTTGCTGTCCTTGTTGGCATTCTCGTTAAGCAGATCTGCATTTGACTG 1876 Query 42169 ATGAATCAATCC 42180 || |||| ||| Sbjct 1877 ATCGATCAGTCC 1888 >seq2701 Length=6067 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 60615 ATTACAAACTCTCGGTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60674 |||||| ||| ||||| || | | | ||| || |||||||||| || | || Sbjct 5367 ATTACAGCTTCTGAGTGAAAGTTCTTGTTACAACATCCTGCTGCTGTTCTTTGGTTAAAG 5308 Query 60675 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 60734 |||| || || || |||||||| || |||||||| ||||| ||||||||||| || | Sbjct 5307 AGTTGAAACGTACAGCATAACCTGAAACACGGATTGTCAGTGTAGGATATTTTTCAGGGT 5248 Query 60735 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 60794 | | | |||||| ||| ||||| | |||||||| || ||||| || ||||| | Sbjct 5247 GTTCCATTGCATCGAGCAGTGTTTCTCTGTTGAGAACGTTCACATTCAGATGCTGACCGC 5188 Query 60795 CTTC 60798 |||| Sbjct 5187 CTTC 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530686173234000