Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3176 98.7 2e-15 seq398 86.0 1e-11 >seq3176 Length=15124 Score = 98.7 bits (108), Expect = 2e-15 Identities = 243/363 (67%), Gaps = 8/363 (2%) Strand=Plus/Minus Query 72432 GAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGA 72491 ||||||| |||| || || ||| ||||||||| |||| || || |||||||| || Sbjct 1939 GAGTTGTTTGGACTGGTACAGGAAGTTCCTCAGAGCGAAACAACACCATTTTATCCACGT 1880 Query 72492 AGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCG 72551 || ||||| ||||||||| | || | | ||||| || || |||||||| || Sbjct 1879 TCACCCTACGGCGTTGCAAAGCTCTATGGATTCTGGATTATGAAGAACTACCGTGAATCC 1820 Query 72552 TATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAG--AGGCC 72609 ||| |||||| |||||| |||| ||||| || ||||| | ||| | ||| Sbjct 1819 TATGACATGTTCTGCTGCAACGGCATTTTGTTCAACCATGAGAG--CGAACGGCGAGGGG 1762 Query 72610 ATCAGTTCGTGACTCGTAAAATCACGAAGGTGG--TCGCGAATATTTTCAATGGTGTCGA 72667 | || || ||||||||||||||| || | | || ||| ||| | | || Sbjct 1761 AAACCTTTGTCACTCGTAAAATCACGTTGGCAGCTGCCCGCATA-GCCCAAGGTTATCAG 1703 Query 72668 AAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTA 72727 | | || | |||||||| || | ||||| | | || ||||| ||||| || ||||| Sbjct 1702 GACAAGC-TCTATCTCGGCAACCTCAATGCCCTACGCGACTGGGGCTATGCAAAAGATTA 1644 Query 72728 CGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAAC 72787 ||| || |||||| | || ||||| || | || || || | ||| ||||| || Sbjct 1643 CGTGGAGTGCATGTGGCTTATCCTGCAGCAGCCTGAACCTGACGATTTTGTCATTGCTAC 1584 Query 72788 AGG 72790 || Sbjct 1583 TGG 1581 >seq398 Length=3443 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 167313 ATACCTCCTACTTTTGCAGCCGCGAGAAATACGTATTCTGGTAGTTCGATCTCGAAAAAC 167372 || || || || | ||| ||||| ||||| |||||||||||| |||| |||||||| Sbjct 2002 ATGCCCCCGACATGTGCTGCCGCAAGAAAGACGTATTCTGGTTTTTCGGAGTCGAAAAAA 2061 Query 167373 GCGTTCACTTCTCGTTGGTTTGTCAGGTCGAGATCTTTTGACGTTCGAGTGACGATGTTC 167432 || |||||| | |||||||| | |||||| ||||| || ||| | ||||| Sbjct 2062 TTGTCTACTTCTTGCTGGTTTGTTAAGTCGAGTTCTTTGTGTGTACGACCAATTATGTTT 2121 Query 167433 ATATATCCTTCTTTTTGCAAGAGTCTCATAAGAGCGCTTCCGACCATTCCTGTGTGACCT 167492 | ||||||| || |||||| | || | ||| || || | ||| |||| || Sbjct 2122 GTGTATCCTTTCTTCTGCAAGTTGCGCACGATAGCCGAGCCCACAAGACCTCTGTGTCCG 2181 Query 167493 GCCACGTATATCTTCGAGTGTTTTTCCATT 167522 || |||||||| || || || |||||| Sbjct 2182 GCAACGTATATTTTACTTTGCTTATCCATT 2211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179577332072122