Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq140 120 4e-22 seq4587 96.9 4e-15 seq1764 87.8 2e-12 seq1580 82.4 9e-11 seq1008 82.4 9e-11 >seq140 Length=204551 Score = 120 bits (132), Expect = 4e-22 Identities = 176/244 (72%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG 10933 ||||| |||||||||||| |||||||||||| | ||||| || ||||||||||| || Sbjct 37235 TCAAATCCATCCATCTCAACCAAGAGTTGATTTAGTGTTTGCTCACGTTCATCATTACCG 37294 Query 10934 -GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 10992 | || ||| |||| ||| || || || || ||||||||||| || |||| | Sbjct 37295 CCACCTA-AACCGGCACCGCGATGACGCCCAACCGCATCAATTTCATCAATAAAAAGCAA 37353 Query 10993 ACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 ||||| ||||| || |||| ||||| || || | | ||||||||||| Sbjct 37354 GCACGGCGCATTTTTCTTTGCTTGCGCAAACATATCGCGCACACGCGATGCACCGACACC 37413 Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCAC 11111 ||||||||| |||||||||| | | ||||| |||| || || || || || | ||||| Sbjct 37414 CACAAACATCTCCACAAAATCCGAGCCGGAA-ATTGAGAAAAACGGCACATTAGCTTCAC 37472 Query 11112 CCGC 11115 | || Sbjct 37473 CGGC 37476 >seq4587 Length=20029 Score = 96.9 bits (106), Expect = 4e-15 Identities = 184/265 (69%), Gaps = 6/265 (2%) Strand=Plus/Minus Query 10811 AGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTC--T 10868 || |||| |||||| ||||| |||||| || || || || | | || || || | Sbjct 15670 AGTGCGTGGTCAAGAATATCCGGGCGGTTTGTTGCAGCAATAATGATAATTCCT-TCATT 15612 Query 10869 CGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCAT 10928 || | ||||||| ||||| ||| || || ||||| | |||||||| ||||| |||| Sbjct 15611 CGCTG-CAAAGCCGTCCATTTCAACTAAAAGCTGATTCAAAGTTTGTTCACGTTCGTCAT 15553 Query 10929 TCGCGG-GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAA 10987 | || || || ||| || | |||||| || || ||||||||||| || |||||| Sbjct 15552 GCCCGCCGCTTAT-ACCTGCGCCGCGTTGACGTCCTACCGCGTCAATTTCGTCAATGAAA 15494 Query 10988 ACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCG 11047 | || || || ||||| || | |||| | ||| || ||||| || || Sbjct 15493 ATTATGCAGGGCGAATTTTTCTTTGCCTGTGCAAATAAATCACGAACTCTTGACGCGCCA 15434 Query 11048 ACACCCACAAACATTTCCACAAAAT 11072 ||||| ||||||||||| ||||||| Sbjct 15433 ACACCTACAAACATTTCAACAAAAT 15409 >seq1764 Length=18778 Score = 87.8 bits (96), Expect = 2e-12 Identities = 198/291 (68%), Gaps = 14/291 (5%) Strand=Plus/Plus Query 10789 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 10848 |||||| || || || || | | || | |||||| ||||| | |||||| || || || Sbjct 15747 ATCAAAACGTCCAGGACGCATAATCGCCTGGTCAAGTATATCTACGCGGTTGGTAGCTGC 15806 Query 10849 GATGACAACGATGCCCGTCTCGTT---ATCAAAGCCATCCATCTCAGTCAAG-AGTTGAT 10904 || |||| ||||| ||||| | |||| |||||||||||| |||| || |||| Sbjct 15807 CATAACAATAATGCCT---TCGTTGACACCAAAACCATCCATCTCA-ACAAGCAGCTGAT 15862 Query 10905 TGATGGTTTGTTCGCGTTCATCAT-TC--GCGGGCATACCACCCGCACTGCGTTGCTTAC 10961 | | || || ||||| || |||| || || ||| ||| | || |||| | | Sbjct 15863 TCAAAGTCTGCTCGCGCTCGTCATGTCCGCCGCCCAT---ACCTGTACCGCGTCGTCTGG 15919 Query 10962 CGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAA 11021 | || || || || |||||||| || || |||||||| ||||| ||| | | || Sbjct 15920 CAACAGCATCTATCTCATCGATAAACACTATACACGGCGCATTTTGTTTGGCCTCCTGAA 15979 Query 11022 AGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAAT 11072 | | ||| || || | ||||| || || || ||||| || ||||||| Sbjct 15980 ACAAATCACGTACACGGGAAGCACCTACTCCAACGAACATCTCTACAAAAT 16030 >seq1580 Length=60959 Score = 82.4 bits (90), Expect = 9e-11 Identities = 228/341 (67%), Gaps = 9/341 (3%) Strand=Plus/Plus Query 10781 ATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTC 10840 |||| ||| || ||||| || | ||| || ||||| |||||| || || ||||| Sbjct 60620 ATCTGACGGTCGAAGCGTCCGGCGCGAAGCAGGGCACGGTCAAGTATGTCGGCACGGTTG 60679 Query 10841 GTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGT 10900 || || || || || | || ||| | | | | | || |||||||||||||| | || Sbjct 60680 GTGGCGGCCATTACGATGACGCCGTTGTTGGTGCCGAATCCATCCATCTCAGTGAGTAGC 60739 Query 10901 TGATTGATGGTTTGTTCGCGTTCATCATTCGC---GGGCATACCACCCGCACTGC-GTTG 10956 || || | || | |||||||| ||||| || | || || || |||| | | Sbjct 60740 TGGTTTAATGTGTTCTCGCGTTCGTCATTGGCATTGCTCAGTCCGCCACGGCTGCGGGCG 60799 Query 10957 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCAC-GGGCAA 11015 | | || || ||||| ||||| ||||| || | ||||| || |||||| | ||| Sbjct 60800 CGT-CCCACAGCGTCGATTTCGTCGATAAAGATAATACA-GGGAGATTTTTTCTTGGCTT 60857 Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075 |||| || | || || || | |||||| || || |||||||| || || ||| | | Sbjct 60858 CTTCGAAAAGGTCGCGTACACGTGAGGCACCAACTCCGACAAACATCTCGAC-AAAGTCG 60916 Query 11076 CGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGC 11115 | | |||||| || ||| || ||||| | || ||||| Sbjct 60917 CTTCCCGACATTGAGAAGAAAGGCACGTTAGCCTCGCCCGC 60957 >seq1008 Length=23546 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 10961 CCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACG-GGCAACTTC 11019 |||| |||||| || ||||||||||| ||||| | |||| | || || ||| | Sbjct 965 CCGATGGCGTCGATCTCATCGATGAACACGATGCTCGGT-GCCTTGGACTTGGCCTGGTT 1023 Query 11020 AAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGC 11079 || | || || |||| |||||||||| ||||||||||| || ||||| | || | | Sbjct 1024 GAACAGGTCGCGAACTCGGCTGGCACCGACGCCCACAAACATCTCGACAAAGTCGGAGCC 1083 Query 11080 GGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11139 ||| | || ||||| ||||||| ||||| || | || ||| || |||||||| Sbjct 1084 GGACAACGAGAAGAAGGCTACGTTGGCCTCACCGGCAACAGCCTTGGCCAGAAGGGTCTT 1143 Query 11140 CCCCGTCCCAGG 11151 || || || || Sbjct 1144 ACCGGTTCCGGG 1155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597315526174920