Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_011222.1 Length=44929 Score E Sequences producing significant alignments: (Bits) Value seq1923 111 5e-20 seq4380 95.1 3e-15 seq2619 95.1 3e-15 seq3076 91.5 4e-14 >seq1923 Length=163503 Score = 111 bits (122), Expect = 5e-20 Identities = 275/415 (66%), Gaps = 7/415 (2%) Strand=Plus/Minus Query 19930 ATTATACATGAGCTCCTTTGGATGTTGAAGGGGGACACCAATATAAAATACCTAAATGAA 19989 |||||| | || || |||||| | ||||| || || || ||| |||||| || | ||| Sbjct 156860 ATTATATACGAACTGCTTTGGTTCTTGAATGGTGATACTAATGCAAAATATCTGCAAGAA 156801 Query 19990 AATGGTGTTCATATTTGGGACGATTGGGCAAAGCCTTCCGGTGATCTTGGACGTATATAC 20049 |||| || || ||| | || ||||| | ||| || | || |||| ||| || Sbjct 156800 CATGGAGTCAGAATCTGGAATGAATGGGCTGATCCTGATGGCAACCTCGGACATATCTAT 156741 Query 20050 GGTAAACAATGGCGTGACTGGCGTATAAATAGCAAAATGAAAGTA--GATCAAATTGATT 20107 || | |||||| | |||| | ||| | || | || ||||| |||| Sbjct 156740 GGATATCAATGGAGGTCTTGGCCTGATTATA--ATGGTGGACATATAGATCAGATTGCAC 156683 Query 20108 CAGTTATAGATATGATTAAGTTTAACCCGGAGTCAAGAAGGCTAATTGTTAGTGCTTGGA 20167 ||| || || ||| || ||| || || || ||||| | ||||| |||||||| Sbjct 156682 AAGTAATCGACCAGATAAAAAATAATCCCGATTCTAGAAGAATGATTGTGTCTGCTTGGA 156623 Query 20168 ATGTTGGAGAAATACACATGATGGCACTTCCTCCGTGCCACTGCTTTTTTCAGTTCTATG 20227 |||||| || || | | ||| || || || |||||| | ||||||| ||||||| Sbjct 156622 ATGTTGCTGATATTGATAATATGAATCTCCCACCATGCCACATCCTTTTTCAATTCTATG 156563 Query 20228 TGTCTGAGTCCGGTTATTTGGACTTGAAACTGTACCAAAGAAGCGCAGACCTATTTTTAG 20287 || | | ||| | ||| | | | || || || ||||| ||||| ||| | | Sbjct 156562 TGGCAAA---CGGCAAGTTGAGCCTTCAGCTCTATCAGAGAAGTGCAGATACGTTTCTTG 156506 Query 20288 GCGTTCCTTTCAATATTGCATCTTATTCTATCTTGCTGTCTATGGCTGCACAGGT 20342 |||||||||| |||||||| |||||| || | ||||| |||| ||| ||||| Sbjct 156505 GCGTTCCTTTTAATATTGCTTCTTATGCTTTATTGCTTATGATGGTTGCTCAGGT 156451 >seq4380 Length=47567 Score = 95.1 bits (104), Expect = 3e-15 Identities = 274/417 (66%), Gaps = 11/417 (3%) Strand=Plus/Plus Query 19930 ATTATACATGAGCTCCTTTGGATGTTGAAGGGGGACACCAATATAAAATACCTAAATGAA 19989 ||||| |||| || |||||| | | || || |||||||| | |||||||| | || Sbjct 21639 ATTATTTATGAACTGCTTTGGTTCCTCAAAGGCGACACCAACGTGAAATACCTTCAGGAC 21698 Query 19990 AATGGTGTTCATATTTGGGACGATTGGGCAAAGCCTTCCGGTGATCTTGGACGTATATAC 20049 |||| || | ||| ||| |||| ||||| | || || | || |||| ||| ||| Sbjct 21699 CATGGAGTACGTATATGGAACGAGTGGGCTGACCCCGATGGAGGACTCGGACATATCTAC 21758 Query 20050 GGTAAACAATGGCGTGACTGGC--GTATA-AATAGCAAAATGAAAGTAGATCAAATTGAT 20106 || | || ||||| |||| | || || || | | | || || ||| Sbjct 21759 GGCTATCAGTGGCGCAGTTGGCCCGATTACAACGGCGGACATA---TCGACCAGATTTCG 21815 Query 20107 TCAGTTATAGATATGATTAAGTTTAACCCGGAGTCAAGAAGGCTAATTGTTAGTGCTTGG 20166 || || ||| ||||||| ||| || || ||| | | | || ||| |||||| Sbjct 21816 CAGGTGATCGATCAGATTAAGAATAATCCTGATTCACGGCGTATCATCGTTTCGGCTTGG 21875 Query 20167 AATGTTGGAGAAATACACATGATGGCACTTCCTCCGTGCCACTGCTTTTTTCAGTTCTAT 20226 ||||| | || || ||| ||| ||||||||||||||| | |||||||||||| Sbjct 21876 AATGTGGCCGACATTGACAATATGAACCTTCCTCCGTGCCACATTCTCTTTCAGTTCTAT 21935 Query 20227 GTGTCTG-AGTCCGGTTATTTGGACTTGAAACTGTACCAAAGAAGCGCAGACCTATTTTT 20285 ||| ||| || ||| | ||| | || || || ||||| || ||| || | Sbjct 21936 GTGGCTGAAGGACGG----CTCAGCTTACAGCTTTATCAGAGAAGTGCTGACACCTTCCT 21991 Query 20286 AGGCGTTCCTTTCAATATTGCATCTTATTCTATCTTGCTGTCTATGGCTGCACAGGT 20342 |||||||| || ||||| ||||| ||||| | ||||| |||| |||||||| Sbjct 21992 CGGCGTTCCATTTAATATCGCATCCTATTCATTACTGCTGATGATGGTGGCACAGGT 22048 >seq2619 Length=11042 Score = 95.1 bits (104), Expect = 3e-15 Identities = 330/503 (66%), Gaps = 18/503 (4%) Strand=Plus/Minus Query 19737 ATGTTTTTTAGAATAAAATA----AAAGATAAATTATGAAGCAGTATTTAGACTTACTAA 19792 || || ||| |||||| | | | ||| || | ||||||||||||||||| ||| | | Sbjct 2977 ATTTTATTTTGAATAAGAAAGTTGAGAGAAAAGTAATGAAGCAGTATTTAGAATTAATGA 2918 Query 19793 AAGAAACTTTAAATTATGGTGAAAAGAGATCAGATCGAACCGGAACGGGAACTATTAGCT 19852 || ||| ||| || | |||| ||| | ||||| || || ||||| || | | Sbjct 2917 AAAAAATTTTGGATGAAGGTGCGCAGAAAAGTGATCGTACTGGTACGGGTACGCTGTCTT 2858 Query 19853 TATTCGGTTTGCA-ACGATCTTATGATCTGCGTGACGGTTTTCCACTTGTCACAACTAAG 19911 |||| || || | || || | |||| ||| |||||||| || || ||||| ||| Sbjct 2857 TATTTGGACATCAGATGAGATT-TAATCTTGCTGAAGGTTTTCCTCTAGTGACAACCAAG 2799 Query 19912 AAG-GTATTCACGAAGGGAATTATACATGAGCTCCTTTGGATGTTGAAGGGGGACACCAA 19970 ||| || || || ||| || |||| || |||||| | | || || || ||||| Sbjct 2798 AAGTGTCATC-TTAAATCAATAATTTATGAACTGCTTTGGTTTCTTAACGGTGATACCAA 2740 Query 19971 TATAAAATACCTAAATGAAAATGGTGTTCATATTTGGGACGATTGGGCAAAGCCTTCCGG 20030 |||||||| |||| || | || || ||| ||||| || ||||| | || Sbjct 2739 CATAAAATATTTAAAAGATCACGGAGTCAGTATCTGGGATGAGTGGGCTGATGAAAATGG 2680 Query 20031 TGATCTTGGACGTATATACGGTAAACAATGGCGTGACTGG-CGTATAAATAGCAAAATGA 20089 ||| || || | ||||||||| | || ||| | |||| || | | | || Sbjct 2679 TGAACTGGGGCCGATATACGGTCACCAGTGGAGATCCTGGAAGTCTGCTGACGGGAGTG- 2621 Query 20090 AAGTAGATCAAAT---TGATTCAGTTATAGATATGATTAAGTTTAACCCGGAGTCAAGAA 20146 |||||||| || | || | ||| ||| || ||| || || || || ||| Sbjct 2620 TGGTAGATCAGATTAGTAATGCGGTTCGTGAT---ATAAAGAACAATCCTGATTCCAGAC 2564 Query 20147 GGCTAATTGTTAGTGCTTGGAATGTTGGAGAAATACACATGATGGCACTTCCTCCGTGCC 20206 || | || ||| || ||||||| |||||||| | | ||||||| | |||| || | Sbjct 2563 GGATCATCGTTTCAGCCTGGAATGCCGGAGAAATTGATAAGATGGCATTAGCTCCTTGTC 2504 Query 20207 ACTGCT-TTTTTCAGTTCTATGT 20228 | |||| |||| ||||| ||||| Sbjct 2503 A-TGCTCTTTTCCAGTTTTATGT 2482 >seq3076 Length=17365 Score = 91.5 bits (100), Expect = 4e-14 Identities = 440/690 (64%), Gaps = 21/690 (3%) Strand=Plus/Minus Query 19885 GACGGTTTTCCACTTGTCACAACTAAGAAGGTAT-TCACGAAGGGAATTATACATGAGCT 19943 || |||||||| || | || ||||||||| | || | ||| ||| || | ||| | Sbjct 17126 GATGGTTTTCCGCTGCTTACCACTAAGAAGCTTCATCTC-AAGTCAATCATTTACGAGTT 17068 Query 19944 CCTTTGGATGTTGAAGGGGGACACCAATATAAAATACCTAAATGAAAATGGTGTTCATAT 20003 || ||| | |||| || ||||| || || | || | || ||| || | ||| Sbjct 17067 GCTGTGGTTCTTGAGAGGCGACACGAACGCTAAGTGGTTACAGGAGCGTGGAGTGCGTAT 17008 Query 20004 TTGGGACGATTGGGCAAAGCCTTCCGGTGATCTTGGACGTATATACGGTAAACAATGGCG 20063 ||| |||| ||||| | |||| | ||||||| ||| || ||| | || ||||| Sbjct 17007 ATGGAACGAGTGGGCTGATGAGGACGGTAACCTTGGACATATCTATGGTTACCAGTGGCG 16948 Query 20064 ----TGACTGGCGTATAAATAGCAAAATGAAAGTAGATCAAATT---GATTCAGTTATAG 20116 || | || ||||| | || | | ||||||| || ||| || |||| Sbjct 16947 CTCGTGGCCGGACTATAA-TGGCGG---GCATATAGATCAGATAACGGAT---GTCATAG 16895 Query 20117 ATATGATTAAGTTTAACCCGGAGTCAAGAAGGCTAATTGTTAGTGCTTGGAATGTTGGAG 20176 || ||| ||| |||||| || || || || || || || ||||| ||||| || | | Sbjct 16894 ATCAGATAAAGAATAACCCTGACTCGAGGAGACTTATCGTCAGTGCGTGGAACGTGGCTG 16835 Query 20177 AAATACACATGATGGCACTTCCTCCGTGCCACTGCTTTTTTCAGTTCTATGTGTCTGAGT 20236 | ||| | | ||| ||||||||||| || | | ||||||||||||||| |||| Sbjct 16834 ACATAGAGAACATGAACCTTCCTCCGTGTCATATCCTCTTTCAGTTCTATGTGGCTGA-- 16777 Query 20237 CCGGTTATTTGGACTTGAAACTGTACCAAAGAAGCGCAGACCTATTTTTAGGCGTTCCTT 20296 ||| | | ||| || ||||||| | ||||| ||| ||| | || || || | Sbjct 16776 -CGGACGTCTCTCATTGCAATTGTACCAGCGCAGCGCCGACACGTTTCTCGGTGTGCCGT 16718 Query 20297 TCAATATTGCATCTTATTCTATCTTGCTGTCTATGGCTGCACAGGTTTGCGGTTTAAAGC 20356 ||||||| || ||| | | || || |||| || ||||| ||| | ||| Sbjct 16717 TCAATATCGCCAGCTATGCGTTGCTGTTGATGATGGTAGCGCAGGTGACGGGTCTTAAGG 16658 Query 20357 CTCGTAGATTCATTCATACGATCGGTGACGGACATATATATTTGAATCACGTTGAGCAGG 20416 || || || | | |||| |||||| ||| | ||| | |||||| ||||||| Sbjct 16657 CTGGTGACTTTGTGTACACGACAGGTGACACGCATCTGTATCTCAATCACACAGAGCAGG 16598 Query 20417 TGAAAGAACAATTGAGTAGAGAGCCGTTTGCCCTTCCAAAATTGGAGCTAAACCCAAATG 20476 || |||| ||||||||| ||||| || || || || || | | Sbjct 16597 CCCGTCTGCAGTTGACGAGAGAGCCGAGGAAACTTCCTAAGATGATACTGAATCCGGACG 16538 Query 20477 T-TCGTAATATATTCGATTTTAAGTATGAAGATATTAAAATAGTAGATTATAACTGCCAT 20535 | || | ||||| || || || || || ||| | | | | || || ||| || ||| Sbjct 16537 TGAAGTCA-ATATTTGACTTCAAATACGAGGATTTCACATTGGTGGACTATGACCCACAT 16479 Query 20536 CCGGCTATAAAGGGGGATGTTGCGGTATGA 20565 || |||||||| ||| ||| |||||| Sbjct 16478 CCACATATAAAGGCGGAGGTTAGCGTATGA 16449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143642501830058