Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq3148 91.5 2e-13 seq4079 86.0 7e-12 seq4013 84.2 2e-11 seq3449 82.4 8e-11 seq112 82.4 8e-11 >seq3148 Length=25767 Score = 91.5 bits (100), Expect = 2e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 110994 GGCCCTGGCCGTGGCTCCGGCGGC-GGCTCGCTGGTGAACTACCTGCTGGGCATCACCTC 111052 ||||| |||||||| | ||||| || || ||||| |||| |||||||||||| Sbjct 8019 GGCCCCGGCCGTGG-TAGTGCGGCAGGTTCAGTGGTGGCCTACTGTCTGGGCATCACCAA 8077 Query 111053 GCTCGACCCGATCAAGTACGACCTGTCGTTCGAGCGGTTCATCAACCCCGACCG 111106 | |||||||| | ||||||||||| ||||||||| ||| ||||||||||||| Sbjct 8078 GATCGACCCGCTGAAGTACGACCTCCTGTTCGAGCGTTTCCTCAACCCCGACCG 8131 >seq4079 Length=28942 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 110994 GGCCCTGGCCGTGGCTCCGGCGGCGGCTCGC-TGGTGAACTACCTGCTGGGCATCACCTC 111052 || || ||||||||||| ||| || | | | ||||| |||| ||||||||||| Sbjct 12186 GGGCCAGGCCGTGGCTC-GGCAGCCGGTAGTGTGGTGGCCTACTGCCTGGGCATCACGAA 12128 Query 111053 GCTCGACCCGATCAAGTACGACCTGTCGTTCGAGCGGTTCATCAACCCCGACCG 111106 | |||||||| | |||||||||||| ||||||||| ||| | ||||||||||| Sbjct 12127 GATCGACCCGCTGAAGTACGACCTGCTGTTCGAGCGTTTCCTGAACCCCGACCG 12074 >seq4013 Length=40504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| | |||||| | ||||||||||||||||||||||||||||| || ||||| | | Sbjct 22507 GCGGGATGGAGCAGTT-GGTAGCTCGCCAGGCTCATAACCTGGAGGTCGGAGGTTCGAGT 22449 Query 92675 CCCACTCCCGCCACTA 92690 ||| ||||||| |||| Sbjct 22448 CCCCCTCCCGCAACTA 22433 >seq3449 Length=4901 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 110996 CCCTGGCCGTGGCTCCGGCGGCGGCTCGCTGGTGAACTACCTGCT-GGGCATCACCTCGC 111054 |||||| ||||| || | | ||||||| ||||| |||| |||| ||||||||| | Sbjct 4901 CCCTGGACGTGGTTCGGCTGCCGGCTCGGTGGTGGCCTAC-TGCTTGGGCATCACGAAGA 4843 Query 111055 TCGACCCGATCAAGTACGACCTGTCGTTCGAGCGGTTCATCAACCCCGACCG 111106 | ||||| || |||||||||||| ||| ||||| ||| | || |||||||| Sbjct 4842 TAGACCCCATGAAGTACGACCTGCTGTTTGAGCGTTTCCTGAATCCCGACCG 4791 >seq112 Length=216842 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 110994 GGCCCTGGCCGTGGCTCCGGCGGCGGCTCGCTGGTGAACTACCTGCTGGGCATCACCTCG 111053 || || || || ||||| | | ||| ||| ||||| ||| || |||||||| | Sbjct 52088 GGACCCGGACGAGGCTCGGCAGCCGGTTCGGTGGTGGCCTATTGCCTCGGCATCACACAG 52029 Query 111054 CTCGACCCGATCAAGTACGACCTGTCGTTCGAGCGGTTCATCAACCCCGACCG 111106 | |||||| |||||||||||||| ||||||||||||| |||| |||||||| Sbjct 52028 ATAGACCCGCTCAAGTACGACCTGCTGTTCGAGCGGTTCCTCAATCCCGACCG 51976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526564835934480