Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq3358 95.1 9e-15 seq5048 93.3 3e-14 seq4193 89.7 4e-13 seq3128 84.2 2e-11 >seq3358 Length=8311 Score = 95.1 bits (104), Expect = 9e-15 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 118178 TCCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACT 118237 ||| ||||| ||||||| ||| | || ||||| ||||| ||||| ||||| ||| Sbjct 2046 TCCATCGCGTCCGGCCCGTCCGGTTTCCTGATAGTAACCTTCCAGACTCTTGGGAATATC 2105 Query 118238 GTGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGT 118294 || |||||||| || ||||||||||| || ||||| |||||||| || || ||||| Sbjct 2106 GTAGTGTATCACGAATCGCACGTCGGGCTTGTCGATACCCATCCCAAAGGCAATCGT 2162 >seq5048 Length=10663 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 118151 GTAAAAGGCGATACACTCCGACAGTTTTCCGTCGCGACCGGCCCTTCCTATCTCTTGATA 118210 ||| ||||||||||| || | ||||||||| ||||| | |||| |||| ||||| Sbjct 5287 GTAGAAGGCGATACATTCTCCCTCGCCTCCGTCGCGTCCGGCACGTCCTGTCTCCTGATA 5346 Query 118211 ATAACCGTCCAGTGATTTGGGCATACTGTGATGTATCACCAACCGCACGTCGGGTTTATC 118270 || || || || |||||||| || || ||||| || ||||||||||| || || Sbjct 5347 GTAGCCTTCGAGACTCTTGGGCATGTCGTAGTGAATCACAAAACGCACGTCGGGCTTGTC 5406 Query 118271 GATGCCCATCCCGAACGCTATCGT 118294 ||||||||| ||||| || || || Sbjct 5407 GATGCCCATGCCGAAGGCGATGGT 5430 >seq4193 Length=2961 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 118152 TAAAAGGCGATACAC--TCCGACAGTTTTCCGTCGCGACCGGCCCTTCCTATCTCTTGAT 118209 || |||||||||||| ||| || ||||| ||||| || | || |||| |||| Sbjct 602 TAGAAGGCGATACACAGTCCCTCACCG--CCGTCACGACCTGCACGGCCCGTCTCCTGAT 545 Query 118210 AATAACCGTCCAGTGATTTGGGCATACTGTGATGTATCACCAACCGCACGTCGGGTTTAT 118269 |||| || ||||| || || || || || ||| ||||| || ||||| ||||| |||| Sbjct 544 AATAGCCTTCCAGCGACTTCGGAATGTCGTAATGGATCACGAAGCGCACATCGGGCTTAT 485 Query 118270 CGATGCCCATCCCGAACGCTATCGT 118294 |||||||||| ||||| || || || Sbjct 484 CGATGCCCATACCGAAGGCGATGGT 460 >seq3128 Length=39310 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 118179 CCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACTG 118238 ||||| || ||||| | || ||||||||||||| || || || || ||||| ||| | Sbjct 1655 CCGTCACGGCCGGCACGCCCAGTCTCTTGATAATAGCCTTCGAGCGACTTGGGAATATCG 1714 Query 118239 TGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGT 118294 | |||||| || |||||||| || || || ||||| ||||| || || || || || Sbjct 1715 TAATGTATGACGAACCGCACATCAGGCTTGTCGATACCCATGCCAAAAGCGATGGT 1770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381749075087256