Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_012635.1 Length=168394 Score E Sequences producing significant alignments: (Bits) Value seq2964 118 1e-21 seq2701 93.3 5e-14 >seq2964 Length=2227 Score = 118 bits (130), Expect = 1e-21 Identities = 514/796 (65%), Gaps = 23/796 (3%) Strand=Plus/Plus Query 43891 AATATCAGGATACATCCTTTTGCTTGCACACTCTAAAGCAAGCTGCTTAATATCATAGTT 43950 |||||| |||||||| || ||| || || || | ||| |||| ||| ||||| ||||| Sbjct 1103 AATATCCGGATACATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTT 1162 Query 43951 CGGATCGTCTTTATAAAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGGAA 44007 ||||| | | | | | || | || || | | |||||| | ||||||||||| Sbjct 1163 AGGATCACCCTCTTTACGGTTCAGTCCCTCCTTGATGGCAAACA---CCAGCTTAGGGAA 1219 Query 44008 AATAGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTG 44067 || | |||| | || || || ||||| ||| | || |||||||| | ||||| Sbjct 1220 AACCGCAGTTCTGTGATTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTG 1279 Query 44068 AATCATTCGTTCAGTCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGTGTTTG 44127 |||| ||| |||| ||||| ||| || | ||||| || || || || Sbjct 1280 GATCAGACGTGACTCCCAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTG 1339 Query 44128 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATAC 44187 ||||| || || || || ||||||||||||||| || ||||| || || || Sbjct 1340 ACCGTTGGAGGTATGCAGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCA 1399 Query 44188 ATCTTTTTCTGTTTTAGATTGAGCATAATTTAACGCATCAGCGATTTGCCATTTTTCTG- 44246 || ||||| || | | | ||| | | || ||||| || ||||| | || | Sbjct 1400 CTCCTTTTCAGTACGGGCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGC 1459 Query 44247 CATCCTC-AATATGTTTTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACA 44305 |||| || ||| | || | | | ||||||| || | ||| || | ||| ||| Sbjct 1460 CATCTTCTGATACTTCATGAAACTCTTGG--TAACATACGGGGCAAGCACCTCATC-ACA 1516 Query 44306 TTAG-CAAAAGTCGTTCCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCAT 44364 | | || || |||||||| |||| |||||||| || | || ||||| | Sbjct 1517 GCGGTTGATGGTTGTACCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGT 1576 Query 44365 AATTGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAA 44424 || || || || || |||||| ||||| | ||| || | |||||||| | ||| || Sbjct 1577 AACCGCGGTTGCGGTACTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAA 1636 Query 44425 TCCGTTCTCAAGCATTCCTTTTAAATCTACTAAACA-ACAATTAGTAAAT--GGAAGAGC 44481 ||| || |||||||| | ||| | | | || ||| || | | || |||||| | Sbjct 1637 ACCGCGTTCCAGCATTCCGCCGACATCGA-TCAGCATACAGTT-GAACATCGGGAAGAAC 1694 Query 44482 AGGGGAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAA-TAA 44540 || ||||| || | ||| || ||||| || || |||||||| ||| ||| || | Sbjct 1695 -GGTGAATAGTCGAGATCGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAACTTC 1753 Query 44541 AAGACGGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCC 44597 || || | ||| | ||| ||| ||| | |||||||| || | |||||| | Sbjct 1754 CTGA-GGAAGCATGTGCTGTTTTGCATAGTGGCGTGCAACAATACCTGCAAGAAGGTCAC 1812 Query 44598 GTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTAAAAGGTCTTTATTAG 44657 | || || |||| ||| || || || ||||||||||| | || ||| ||| | Sbjct 1813 GCTGGGTCGGAATAACCTTGCTGTCCTTGTTGGCATTCTCGTTAAGCAGATCTGCATTTG 1872 Query 44658 TTTTATGAATCAATCC 44673 | || |||| ||| Sbjct 1873 ACTGATCGATCAGTCC 1888 >seq2701 Length=6067 Score = 93.3 bits (102), Expect = 5e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 63140 ATTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 63199 |||||| ||| ||| || || | | | ||| || |||||||||| || | || Sbjct 5367 ATTACAGCTTCTGAGTGAAAGTTCTTGTTACAACATCCTGCTGCTGTTCTTTGGTTAAAG 5308 Query 63200 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 63259 |||| || || || |||||||| || |||||||| ||||| ||||||||||| || | Sbjct 5307 AGTTGAAACGTACAGCATAACCTGAAACACGGATTGTCAGTGTAGGATATTTTTCAGGGT 5248 Query 63260 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 63319 | | | |||||| ||| ||||| | |||||||| || ||||| || ||||| | Sbjct 5247 GTTCCATTGCATCGAGCAGTGTTTCTCTGTTGAGAACGTTCACATTCAGATGCTGACCGC 5188 Query 63320 CTTC 63323 |||| Sbjct 5187 CTTC 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538698462518160