Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_012638.1 Length=165429 Score E Sequences producing significant alignments: (Bits) Value seq2964 125 8e-24 seq2701 93.3 4e-14 >seq2964 Length=2227 Score = 125 bits (138), Expect = 8e-24 Identities = 513/793 (65%), Gaps = 17/793 (2%) Strand=Plus/Plus Query 41109 AATATCAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGTTTAATATCATAGTT 41168 |||||| |||||||| || ||| ||||| || ||||| |||| || ||||| ||||| Sbjct 1103 AATATCCGGATACATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTT 1162 Query 41169 CGGATCGTCTTTATAAAGATTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAAAAT 41228 ||||| | | | | | || | || || | | | | || ||||||||||||| Sbjct 1163 AGGATCACCCTCTTTACGGTTCAGTCCCTCCTTGATGGCAAACACCAGCTTAGGGAAAAC 1222 Query 41229 AGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 41288 | |||| | || || || ||||| ||| | || |||||||| | ||||| || Sbjct 1223 CGCAGTTCTGTGATTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGGAT 1282 Query 41289 CATTCGTTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGTCC 41348 || ||| |||| |||||| ||| || | ||||| || || || || || Sbjct 1283 CAGACGTGACTCCCAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGACC 1342 Query 41349 GTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACATC 41408 ||| || || || || ||||||||||||||| || ||||| || || || || Sbjct 1343 GTTGGAGGTATGCAGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCACTC 1402 Query 41409 TTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTG-CAT 41467 ||||| || | | | ||| | | || ||||| || ||||| | || | ||| Sbjct 1403 CTTTTCAGTACGGGCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCAT 1462 Query 41468 CCTC-AATATGTTTTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTA 41526 | || ||| | || | | | ||||||| || | ||| || | ||| ||| Sbjct 1463 CTTCTGATACTTCATGAAACTCTTGG--TAACATACGGGGCAAGCACCTCATC-ACAGCG 1519 Query 41527 G-CAAAAGTCGTTCCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAAT 41585 | | || || |||||||| |||| |||||||| || | || ||||| ||| Sbjct 1520 GTTGATGGTTGTACCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGTAAC 1579 Query 41586 TGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAATCC 41645 || || || || |||||| ||||| | ||| || | |||||||| | ||| || || Sbjct 1580 CGCGGTTGCGGTACTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAAACC 1639 Query 41646 GTTCTCAAGCATTCCTTTTAAATCTACTAAACA-ACAATTAGTAAAT--GGAAGAGCAGG 41702 | || |||||||| | ||| | | | || ||| || | | || |||||| | || Sbjct 1640 GCGTTCCAGCATTCCGCCGACATCGA-TCAGCATACAGTT-GAACATCGGGAAGAAC-GG 1696 Query 41703 GGAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAA-TAAAAG 41761 ||||| || | ||| || ||||| || || |||||||| ||| ||| || | | Sbjct 1697 TGAATAGTCGAGATCGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAACTTCCTG 1756 Query 41762 ACGGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCGTT 41818 | || | ||| | ||| ||| ||| | |||||||| || | |||||| || | Sbjct 1757 A-GGAAGCATGTGCTGTTTTGCATAGTGGCGTGCAACAATACCTGCAAGAAGGTCACGCT 1815 Query 41819 GAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTAAAAGGTCTTTATTAGTTT 41878 | || |||| ||| || || || ||||||||||| | || ||| ||| | | Sbjct 1816 GGGTCGGAATAACCTTGCTGTCCTTGTTGGCATTCTCGTTAAGCAGATCTGCATTTGACT 1875 Query 41879 TATGAATCAATCC 41891 || |||| ||| Sbjct 1876 GATCGATCAGTCC 1888 >seq2701 Length=6067 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 60960 ATTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 61019 |||||| ||| ||| || || | | | ||| || |||||||||| || | || Sbjct 5367 ATTACAGCTTCTGAGTGAAAGTTCTTGTTACAACATCCTGCTGCTGTTCTTTGGTTAAAG 5308 Query 61020 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 61079 |||| || || || |||||||| || |||||||| ||||| ||||||||||| || | Sbjct 5307 AGTTGAAACGTACAGCATAACCTGAAACACGGATTGTCAGTGTAGGATATTTTTCAGGGT 5248 Query 61080 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 61139 | | | |||||| ||| ||||| | |||||||| || ||||| || ||||| | Sbjct 5247 GTTCCATTGCATCGAGCAGTGTTTCTCTGTTGAGAACGTTCACATTCAGATGCTGACCGC 5188 Query 61140 CTTC 61143 |||| Sbjct 5187 CTTC 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529211067259560