Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq4320 102 1e-16 seq2369 89.7 6e-13 seq4575 87.8 2e-12 seq3952 84.2 3e-11 seq2941 84.2 3e-11 seq4987 82.4 9e-11 seq3895 82.4 9e-11 seq1740 82.4 9e-11 seq1595 82.4 9e-11 >seq4320 Length=16669 Score = 102 bits (112), Expect = 1e-16 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 176306 TGGAGAATAGGAGACTCGAACTCCTGACAGCCTGCTTGCAAAGCAGGTGCTCTACCAACT 176365 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 16209 TGGAGATAAGGAGACTCGAACTCCTGACCCCCTGCTTGCAAAGCAGGTGCTCTACCAACT 16268 Query 176366 GAGCTAATTCCCCTGG 176381 ||||| || |||| || Sbjct 16269 GAGCT-ATACCCCCGG 16283 >seq2369 Length=11493 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 176306 TGGAGAATAGGAGACTCGAACTCCTGACAGCCTGCTTGCAAAGCAGGTGCTCTACCAACT 176365 ||||| |||||||| ||||||||||||| ||||| ||| | ||||| ||||||||| || Sbjct 11404 TGGAGCATAGGAGATTCGAACTCCTGACCTCCTGCATGCCATGCAGGCGCTCTACCAGCT 11345 Query 176366 GAGCTAATTCCCCT 176379 |||||||| ||||| Sbjct 11344 GAGCTAATACCCCT 11331 >seq4575 Length=28649 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 176122 TGGGCAGGGAGGGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCTCCA 176181 |||||||||| ||||| ||||| ||||| || | || ||||||||||||||||| || Sbjct 5699 TGGGCAGGGATGGATTCGAACCATCGTAG-CAAATGCAACGGATTTACAGTCCGCCCCCT 5757 Query 176182 TTAACCACTCGGACACCTACCCTAA 176206 ||| |||||||| ||||||||| || Sbjct 5758 TTAGCCACTCGGGCACCTACCCAAA 5782 >seq3952 Length=6226 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 32023 GGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTATTGA 32082 ||||||||||| ||||| || ||||||||||| |||||||||||||||||||||| ||| Sbjct 693 GGATTCGAACCCCCGACCCACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTACTGA 752 Query 32083 GTCATG 32088 |||| Sbjct 753 CACATG 758 >seq2941 Length=2426 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 32021 TAGGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGC 32076 ||||||||||||||| |||| || ||||||||||| |||||||||||||||||||| Sbjct 2282 TAGGATTCGAACCTATGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGC 2337 >seq4987 Length=240000 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 32023 GGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTATTGA 32082 ||||||||||| | |||| || ||||||||||| |||||||||||||||||||||| ||| Sbjct 27882 GGATTCGAACCCAAGACCCACAGCTTAGAAGGCTGTTGCTCTATCCAGCTGAGCTACTGA 27941 >seq3895 Length=29622 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 31212 AATCGGGGTGATAGGATTCGAACCTACGGCATCCGCCTCCCAAAGACGGCGCTCTACCAA 31271 |||||| |||| ||||||||||| ||| | ||||| |||| || |||||||||||||| Sbjct 3792 AATCGGAGTGACGGGATTCGAACCCACGACCTCCGCGTCCCGAACGCGGCGCTCTACCAA 3733 Query 31272 GCTGAGCTACACCCCGA 31288 |||||| ||||||||| Sbjct 3732 -CTGAGCCACACCCCGA 3717 >seq1740 Length=34420 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 31212 AATCGGGGTGATAGGATTCGAACCTACGGCATCCGCCTCCCAAAGACGGCGCTCTACCAA 31271 |||||| |||| ||||||||||| ||| | ||||| |||| || |||||||||||||| Sbjct 23486 AATCGGAGTGACGGGATTCGAACCCACGACCTCCGCGTCCCGAACGCGGCGCTCTACCAA 23545 Query 31272 GCTGAGCTACACCCCGA 31288 |||||| ||||||||| Sbjct 23546 -CTGAGCCACACCCCGA 23561 >seq1595 Length=35389 Score = 82.4 bits (90), Expect = 9e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 32024 GATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTA 32078 ||||||||| | |||| ||||||||||||||||||||||||||||||||||||| Sbjct 28638 GATTCGAACGCAGGACCTACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTA 28584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622085147320560