Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq140 129 7e-25 seq4987 107 2e-18 seq173 105 8e-18 seq4587 100 3e-16 seq1580 87.8 2e-12 seq1257 82.4 9e-11 >seq140 Length=204551 Score = 129 bits (142), Expect = 7e-25 Identities = 178/244 (73%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 || || |||||||||||| |||||||||||| | ||||| |||||||||||||| || Sbjct 37235 TCAAATCCATCCATCTCAACCAAGAGTTGATTTAGTGTTTGCTCACGTTCATCATTACCG 37294 Query 12849 GG-CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGAT 12907 | || ||| |||| ||| || || || || |||||||| ||||| |||| | Sbjct 37295 CCACCTAA-ACCGGCACCGCGATGACGCCCAACCGCATCAATTTCATCAATAAAAAGCAA 37353 Query 12908 ACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 ||||| ||||| || |||| ||||| ||||| | | ||||||||||| Sbjct 37354 GCACGGCGCATTTTTCTTTGCTTGCGCAAACATATCGCGCACACGCGATGCACCGACACC 37413 Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCAC 13026 |||||||||||||||||||| | | ||||| |||| || || || || || | ||||| Sbjct 37414 CACAAACATCTCCACAAAATCCGAGCCGGAA-ATTGAGAAAAACGGCACATTAGCTTCAC 37472 Query 13027 CCGC 13030 | || Sbjct 37473 CGGC 37476 >seq4987 Length=240000 Score = 107 bits (118), Expect = 2e-18 Identities = 268/405 (66%), Gaps = 23/405 (6%) Strand=Plus/Minus Query 12696 ATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTC 12755 |||| ||| || ||||| || | ||| | ||| || | ||| ||||| || || || Sbjct 25300 ATCTGACGGTCGAAGCGTCCGGCGCGCAAGAGAGCCTTGTCGAGGATGTCGGCACGATTG 25241 Query 12756 GTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGT 12815 ||||| || | | || | |||| | | | ||||||| |||||||| || | | | Sbjct 25240 GTCGCAGCCAGAATAATCACACCCGAGTTGGTGCCGAAGCCGTCCATCTCGGTGAGCAAT 25181 Query 12816 TGATTGATGGTTTGTTCACGTTCATCATT---CG-----CGGGCAT----ACCACCCGCA 12863 || |||| || | || ||||| || || || ||||||| ||| | ||| Sbjct 25180 TGGTTGAGCGTGTTCTCGCGTTCGTCGTTGCTCGACATCCGGGCATTGGTACCGCGGGCA 25121 Query 12864 CTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCA 12923 | || ||| ||| ||||| ||||| ||||| | ||| ||||| || || Sbjct 25120 CGGC---------CGATGGCATCAATCTCGTCGATGAAGATGATGCACGGAGCTTTCTCC 25070 Query 12924 CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 12983 ||| |||||| || ||||||| ||||||| || ||||||||||||||||| Sbjct 25069 TTGGCCTGGGCAAAGAGGTCGCGCACTCGGCTGGCACCCACGCCCACAAACATCTCCACG 25010 Query 12984 AAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGC 13042 || | || | | |||| | ||||| || || | || || || || | || ||| Sbjct 25009 AAGTCGGAACCCG-ACATCGACATGAAAGGCACATCGGCCTCGCCGGCCACTGCCTTGGC 24951 Query 13043 GAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACC 13087 | ||||||||| ||||| || || |||| |||| |||||||| Sbjct 24950 CAAGAGGGTCTTACCCGTGCCGGGAGGCCCCACGAGGAGGGCACC 24906 >seq173 Length=30558 Score = 105 bits (116), Expect = 8e-18 Identities = 279/414 (67%), Gaps = 19/414 (5%) Strand=Plus/Plus Query 12787 TATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCG 12846 || ||||||| ||||| || ||||||||||| |||| ||| | |||||||| || || | Sbjct 2813 TACCGAAGCCGTCCATTTCTGTCAAGAGTTGGTTGAGGGTGTTCTCACGTTCTTCGTT-G 2871 Query 12847 CGGGCATACCACCCG-------CAC-TGCGTTGCTTACCGACGGCGTCAATTTCGTCAAT 12898 | || | | ||| ||| |||| | | |||| ||| ||||||||||| || Sbjct 2872 CTGGAGAATCCTCCGTTTTTGCCACGTGCG---CGT-CCGATGGCATCAATTTCGTCGAT 2927 Query 12899 GAAAACGATACACGGTTGATTTTCACG-GGCAACTTCAAAGATATCTCGCACTCTCTTGG 12957 ||| | || || || | ||| | | ||| | |||| || || || | | | Sbjct 2928 GAAGATTATGCAAGGG-GCTTTGCTCTTGGCTTTGGCGAAGAGGTCGCGAACACGACTTG 2986 Query 12958 CACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACG 13016 | ||||| || ||||||||||| || || | || | | | |||| | || ||| || || Sbjct 2987 CTCCGACGCCTACAAACATCTCGACGAAGTCGGAGCCAG-ACATGGAGAAGAATGGTACA 3045 Query 13017 TTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCG 13076 |||| ||| || || | |||| ||| ||||| ||||| || || || || || || Sbjct 3046 TTGGCTTCGCCAGCAACGGCTTTGGCAAGGAGCGTCTTGCCTGTGCCAGGAGGGCCTACG 3105 Query 13077 AGAAGGGCACCACGTGGGATCCTGGCACC-ACTTCCAAAGTAGCGCTCGGGTTGTTTAAG 13135 || ||||| ||||| || ||| || |||| | ||| | || ||||| || ||| Sbjct 3106 AGTAGGGCTCCACGAGGAATCTTGCCACCGAGTTCGGTA-TACTTGTCGGGGTGGCGAAG 3164 Query 13136 AAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGTC 13189 || || || || ||||| | ||| | || || |||||| ||| | ||||| Sbjct 3165 GAATTCGACAATCTCTTCGAGTTCTTGTTTTGCTCCGTCGAGACCTGCCACGTC 3218 >seq4587 Length=20029 Score = 100 bits (110), Expect = 3e-16 Identities = 185/265 (70%), Gaps = 6/265 (2%) Strand=Plus/Minus Query 12726 AGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTC--T 12783 || |||| |||||| ||||| |||||| || || || || | | || || || | Sbjct 15670 AGTGCGTGGTCAAGAATATCCGGGCGGTTTGTTGCAGCAATAATGATAATTCCT-TCATT 15612 Query 12784 CGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCAT 12843 || | | ||||| ||||| ||| || || ||||| | |||||||||||||| |||| Sbjct 15611 CGCTG-CAAAGCCGTCCATTTCAACTAAAAGCTGATTCAAAGTTTGTTCACGTTCGTCAT 15553 Query 12844 TCGCGG-GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAA 12902 | || || || ||| || | |||||| || || ||||||||||||||||||||| Sbjct 15552 GCCCGCCGCTTAT-ACCTGCGCCGCGTTGACGTCCTACCGCGTCAATTTCGTCAATGAAA 15494 Query 12903 ACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCG 12962 | || || || ||||| || | |||| | ||| || ||||| || || Sbjct 15493 ATTATGCAGGGCGAATTTTTCTTTGCCTGTGCAAATAAATCACGAACTCTTGACGCGCCA 15434 Query 12963 ACACCCACAAACATCTCCACAAAAT 12987 ||||| |||||||| || ||||||| Sbjct 15433 ACACCTACAAACATTTCAACAAAAT 15409 >seq1580 Length=60959 Score = 87.8 bits (96), Expect = 2e-12 Identities = 229/341 (67%), Gaps = 9/341 (3%) Strand=Plus/Plus Query 12696 ATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTC 12755 |||| ||| || ||||| || | ||| || ||||| |||||| || || ||||| Sbjct 60620 ATCTGACGGTCGAAGCGTCCGGCGCGAAGCAGGGCACGGTCAAGTATGTCGGCACGGTTG 60679 Query 12756 GTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGT 12815 || || || || || | || ||| | | | | |||| |||||||||||||| | || Sbjct 60680 GTGGCGGCCATTACGATGACGCCGTTGTTGGTGCCGAATCCATCCATCTCAGTGAGTAGC 60739 Query 12816 TGATTGATGGTTTGTTCACGTTCATCATTCGC---GGGCATACCACCCGCACTGC-GTTG 12871 || || | || | || ||||| ||||| || | || || || |||| | | Sbjct 60740 TGGTTTAATGTGTTCTCGCGTTCGTCATTGGCATTGCTCAGTCCGCCACGGCTGCGGGCG 60799 Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCAC-GGGCAA 12930 | | || || ||||| |||||||| || || | ||||| || |||||| | ||| Sbjct 60800 CGT-CCCACAGCGTCGATTTCGTCGATAAAGATAATACA-GGGAGATTTTTTCTTGGCTT 60857 Query 12931 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 12990 |||| || | || || || | |||||| || || ||||||||||| || ||| | | Sbjct 60858 CTTCGAAAAGGTCGCGTACACGTGAGGCACCAACTCCGACAAACATCTCGAC-AAAGTCG 60916 Query 12991 CGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGC 13030 | | |||||| || ||| || ||||| | || ||||| Sbjct 60917 CTTCCCGACATTGAGAAGAAAGGCACGTTAGCCTCGCCCGC 60957 >seq1257 Length=4558 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/135 (76%), Gaps = 6/135 (4%) Strand=Plus/Minus Query 10711 GGGAACCTCA-ACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTG 10769 ||||||||| | ||| ||| ||||||||| ||||||||||||| || || |||||| Sbjct 3843 GGGAACCTCTCAAGCCT-GAGAGACTGGGGATACGCCAAGGACTACGTGGAGTGCATGTG 3785 Query 10770 GCTCGTACTCC--AACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACAC 10827 |||| |||||| ||||||| || |||| || | ||| |||| || || | | ||| Sbjct 3784 GCTCATACTCCAGAACAAGA--AGCCGGAAGACTTCGTCATCGCAACCGGCGTGCAGCAC 3727 Query 10828 TCCGTCAGGGAGTTC 10842 ||||| | |||||| Sbjct 3726 TCCGTACGTGAGTTC 3712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613468096584840