Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq2964 118 1e-21 seq2619 98.7 1e-15 seq2701 93.3 5e-14 seq1618 89.7 6e-13 >seq2964 Length=2227 Score = 118 bits (130), Expect = 1e-21 Identities = 375/566 (66%), Gaps = 28/566 (5%) Strand=Plus/Minus Query 153231 GGCATGTTAGAAAACGGGTTCCGTATGGGTAACGCTGATATCGAACCGCCTAAATCAATC 153290 || ||| | ||| ||| ||| |||||||| || || |||||| | ||||| |||||| Sbjct 1654 GGAATGCTGGAACGCGGTTTCAAGATGGGTAATGCCGAAATCGAATCACCTAAGTCAATC 1595 Query 153291 GGTGTTGCTACTGCTCTTATGGCTCAGATCACCGCACAGATTGCTTCTCACCAGTACGGC 153350 || || || || ||| || ||||||| ||| ||| |||| || |||||| Sbjct 1594 AGTACCGCAACCGCGGTTACCGCACAGATCATCGCCCAGGTTGCCAGCCATATCTACGGC 1535 Query 153351 GGGACAACCTTTGCAAA---TGTCGATCAGGTGCTGGCCCCTTACGTTGAAATGACGTAC 153407 || |||||| | ||| ||| ||| ||||||| ||||| || ||| | || | | Sbjct 1534 GGTACAACCAT--CAACCGCTGT-GATGAGGTGCTTGCCCCGTATGTTACCAAGAGTTTC 1478 Query 153408 AACAAACACTTTAAAGATGCT----GTTTGGTACGGGGTTCCTAAATCAAAACAG-TATG 153462 | || | | |||||| | ||| || ||||| | || |||| | || Sbjct 1477 ATGAAGTA-TCAGAAGATGGCCGAGGAGTGGCACA---TTCCTGA-TCCGGACAGCTTTG 1423 Query 153463 CGATGGAAAAAACAGAAAAGGA-TG-TATTCGATGCGTTCCAGTCATACGAATATGAAGT 153520 | | || |||||||| || ||| || || |||||||| ||||||||||| Sbjct 1422 CCCGAGCCCGTACTGAAAAGGAGTGCTAT--GACGCCTTCCAGTCTCTTGAATATGAAGT 1365 Query 153521 AAACACCTTACATACTGCAAATGGACAGACGCCTTTTGTCACGATCACTTTCGGTATGGG 153580 ||||||| | ||||| | || || ||||| || || || || || ||||||| |||| Sbjct 1364 AAACACCCTGCATACCTCCAACGGTCAGACTCCGTTCGTAACTCTCGGTTTCGGTCTGGG 1305 Query 153581 TACTGGTTGGCGCGAACGCATGATCCAGAAAGCAATTCTGAAAAACCGTATTCGTGGACT 153640 || ||| ||| |||||||||| | |||||||| ||| | ||| ||| || Sbjct 1304 AACATCCTGGGAGTCACGTCTGATCCAGAAGTCTATTCTGAAGAACAGAATTGCTGGTCT 1245 Query 153641 GGGTAAAAAAGGCATTACTCCTGTATTCCCAAAACTGGTTATGTTT---ATGGAAAAAGG 153697 || || || ||| | || ||||| || |||| ||||| || || ||| Sbjct 1244 CGGCCGCAATCACAGAACTGCGGTTTTCCCTAAGCTGG---TGTTTGCCAT-CAAGGAGG 1189 Query 153698 GA-TTAACCTTAATCCGGAAGACAGAAACTATGATATTAAGAAATTGGCCCTGGAATGTT 153756 || | |||| ||| || || ||||| ||||| ||||| |||| || ||||| Sbjct 1188 GACTGAACCGTAAAGAGGGTGATCCTAACTACGATATCAAGAAGCTGGCTCTTGAATGCG 1129 Query 153757 CTTCAAAGCGTATGTATCCGGATATT 153782 | || ||| | ||||||||||||||| Sbjct 1128 CCTCCAAGAGAATGTATCCGGATATT 1103 >seq2619 Length=11042 Score = 98.7 bits (108), Expect = 1e-15 Identities = 218/323 (67%), Gaps = 8/323 (2%) Strand=Plus/Minus Query 40012 GGATCATCGTTTCTGCCTGGAACCCTGTTGATCTTGATGATATGGCATTGCGTCCGTGTC 40071 ||||||||||||| |||||||| | | || ||||| | |||||||| ||| |||| Sbjct 2563 GGATCATCGTTTCAGCCTGGAATGCCGGAGAAATTGATAAGATGGCATTAGCTCCTTGTC 2504 Query 40072 ACTGTTTCTTTCAGTTCGTTGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTT 40131 | | | || ||||| |||| | || ||| | ||| |||| ||||||||| Sbjct 2503 ATGCTCTTTTCCAGTTTTATGTAGTTAATAACAAATTATCTTGCCAGTTGTATCAGCGAA 2444 Query 40132 CAGTTGATGTC-TTCTTAGGGTTGCCGTTCAATATCGCCTCCTATGCTCTCCTGACGCAT 40190 ||||||| ||||| | ||| || |||||||| || |||||||| || || ||| Sbjct 2443 GCTGTGATGTCTTTCTTGGTGTT-CCTTTCAATATTGCTAGTTATGCTCTTCTTACTCAT 2385 Query 40191 ATTATCGCTGATATTTGCGGGTACGAAGTGGGCGATCTGGTTTGGACTGGTGGTGATGTC 40250 || || || | |||| || || || ||| | |||||||| || || ||||| Sbjct 2384 ATGATGGCGCAGCAGTGCGATCTTGATGTTGGTGATTTTGTTTGGACCGGCGGAGATGTT 2325 Query 40251 CATATCTATAAAAATGCGGTTGAACAGGCAAAAGAACTTTTACAGCCTAACCGTTCACCA 40310 || | ||| |||| | |||||||||| ||||| |||| | | ||||| Sbjct 2324 CACTTATATTCAAATCACCTGGAACAGGCAA---AACTT---CAGCTTTCAAGAACACCA 2271 Query 40311 ATGCCATTACCGATTCTAAAAAT 40333 | | ||| ||| || ||||||| Sbjct 2270 AGGGAATTGCCGGTTTTAAAAAT 2248 >seq2701 Length=6067 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 51218 GTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCG 51277 || ||||| || |||||| | || || ||||| | | | ||||| || || ||||| Sbjct 5181 GTAGAAGGCGGTCAGCATCTGAATGTGAACGTTCTCAACAGAGAAACACTGCTCGATGCA 5240 Query 51278 GTTGAACATCCTGAAAAATA-CCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCG 51336 | ||||| ||||||||||| || ||| | || ||||||||||| |||||||| || || Sbjct 5241 ATGGAACACCCTGAAAAATATCCTACA-CTGACAATCCGTGTTTCAGGTTATGCTGTACG 5299 Query 51337 TTTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCCGAACCTTTACAGAGAG 51396 ||| ||||| | ||| |||||||| | || ||| | | |||| || || ||| Sbjct 5300 TTTCAACTCTTTAACCAAAGAACAGCAGCAGGATGTTGTAACAAGAACTTTCACTCAGAA 5359 Query 51397 TCTATAAT 51404 || |||| Sbjct 5360 GCTGTAAT 5367 >seq1618 Length=17866 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 40018 TCGTTTCTGCCTGGAACCCTGTTGATCTTGATGATATGGCATTGCGTCCGTGTCACTGTT 40077 |||| | || |||||||||| ||| | || ||||||||||||| ||| ||||| || Sbjct 9388 TCGTCACAGCATGGAACCCTGCTGAGATAGAAGATATGGCATTGCCTCCCTGTCATTGCC 9329 Query 40078 TCTTTCAGTTCGTTGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGTTG 40137 ||||||||||| ||| | | | |||| || || ||| || || ||||| | || Sbjct 9328 TCTTTCAGTTCAATGTGAGCGAAGGTAGTCTTTCCTGTCAGCTATACCAACGTTCGGCTG 9269 Query 40138 ATGTCTTCTTAGGGTTGCCGTTCAATATCGCC 40169 || | || || || ||||||||||||| ||| Sbjct 9268 ATATTTTTTTGGGAGTGCCGTTCAATATAGCC 9237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558031630191840