Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq2964 136 4e-27 seq2619 87.8 2e-12 >seq2964 Length=2227 Score = 136 bits (150), Expect = 4e-27 Identities = 830/1308 (63%), Gaps = 74/1308 (6%) Strand=Plus/Minus Query 154690 GCCCGTGCATACATCGAATATCGCCACGATCGCGATATTGCCCGTGAACAGAAAAGTAAG 154749 |||||||| || ||||| || ||||| || | || | |||||| ||||| | Sbjct 1966 GCCCGTGCCTATATCGAGTACCGCCATGAAAGAGACCGTCTGCGTGAAAAGAAAGGCGCT 1907 Query 154750 CTGTTCAAAGATATCTCCGGCATGGTGAATCTGTCCAACAAAGAGATCACCAACGAGAAC 154809 ||| | | || ||| || || | ||| ||| || ||| | |||||||| Sbjct 1906 CTGAGCCAGGAGATCAAGGGACTGATCGATCAGTCAAATGCAGATCTGCTTAACGAGAAT 1847 Query 154810 GCAAACAAAGAC-GCACGGGTATTCCCTACACAGCGTGATTTGCTGGCGGGTATTGTAGC 154868 || ||||| ||| ||| || |||||| || |||||||| | || || |||||||| || Sbjct 1846 GCCAACAAGGACAGCAAGGTTATTCCG-ACCCAGCGTGACCTTCTTGCAGGTATTGTTGC 1788 Query 154869 GAAGCATTTCGCCCGTAATCATATCCTTCCGAAACATATCGTAGAAGCGCATGACTCCGG 154928 || | || | || || ||||| | | | || ||| ||||| || Sbjct 1787 ACGCCACTATGCAAAACAGCACATGCTTCCTCAGGAAGTTGTGAGAGCCCATGAAAGAGG 1728 Query 154929 CGACATCCATTATCACGATCTGGACTATAGCCCGTTCACCCCTTACACTAACTGCTGTCT 154988 || ||||||| ||||||||| |||||| |||||| ||| ||||| || Sbjct 1727 GGAGATCCATTTTCACGATCTCGACTATTCACCGTTCTTCCCGATGTTCAACTGTATGCT 1668 Query 154989 GGTTGACCTGAAAGGTATGCTTGAGAACGGTTTCAAGATGGGTAACGCGGACATTGAACC 155048 | | || | || ||||| || |||||||||||||||||| || || || ||| | Sbjct 1667 GATCGATGTCGGCGGAATGCTGGAACGCGGTTTCAAGATGGGTAATGCCGAAATCGAATC 1608 Query 155049 GCCTAAATCGATCGGTGTTGCTACCGCTCTCATGGCGCAGATCACCGCACAGATTGCCTC 155108 ||||| || ||| || || ||||| | | || ||||||| ||| ||| ||||| Sbjct 1607 ACCTAAGTCAATCAGTACCGCAACCGCGGTTACCGCACAGATCATCGCCCAGGTTGCCAG 1548 Query 155109 TCACCAGTACGGCGGGACAACCTTTGCGAACGTTG--ATAAAGTGCTGGCTCCATACGTA 155166 || |||||||| |||||| | | | || || || | ||||| || || || || Sbjct 1547 CCATATCTACGGCGGTACAACCAT--CAACCGCTGTGATGAGGTGCTTGCCCCGTATGTT 1490 Query 155167 GAAATGACATTCTTCAAACATCTGCGCGATG-CTGAACATTATGGTATCGAACACTA-TA 155224 | || ||| | || ||| | |||| | || || | | ||| | | Sbjct 1489 ACCAAGAGTTTCATGAAGTATCAGAA-GATGGCCGA-------GGAGTGGCACATTCCTG 1438 Query 155225 ACGATTATGTGTATGCAATCGAGAAG--ACCGAAAAAGA-TG-TATTCGATGCGTTCCAG 155280 | | | ||| |||| || ||||| || || ||| || || |||||| Sbjct 1437 ATCCGGACAGCTTTGCC--CGAGCCCGTACTGAAAAGGAGTGCTAT--GACGCCTTCCAG 1382 Query 155281 TCCTATGAGTATGAAGTGAATACCCTGCATACTGCCAACGGGCAAACCCCGTTTGTTACC 155340 || ||| |||||||| || ||||||||||| ||||||| || || ||||| || || Sbjct 1381 TCTCTTGAATATGAAGTAAACACCCTGCATACCTCCAACGGTCAGACTCCGTTCGTAACT 1322 Query 155341 ATCACTTTCGGTACTGGTACAAGCGACTATGA---ACGCATGATCCAGAAAGCGATTCTG 155397 || ||||||| |||| | | | || || ||| |||||||||| | |||||| Sbjct 1321 CTCGGTTTCGGT-CTGGGAACATC--CTGGGAGTCACGTCTGATCCAGAAGTCTATTCTG 1265 Query 155398 AAAAATCGTATTCGCGGCCTGGGTAAAGAGGGTATCACTCCGGTATTCCCTAAACTGGTT 155457 || || | ||| || || || | | ||| |||| |||||||| ||||| Sbjct 1264 AAGAACAGAATTGCTGGTCTCGGCCGCAATCACAGAACTGCGGTTTTCCCTAAGCTGGTG 1205 Query 155458 ATGTTCATGGAAAAAGGAATCAACCTTGATCCAGAG---GATCAGAACTATGACATCAAA 155514 | ||| | | ||| | |||| | | |||| |||| ||||| || ||||| Sbjct 1204 TTTGCCATCAAGGAGGGACTGAACCGTAA---AGAGGGTGATCCTAACTACGATATCAAG 1148 Query 155515 CAACTTGCCCTTGAATGTGCTTCGAAACGCATGTACCCAGATATCATTA-----GTTCAG 155569 | || || |||||||| || || || | ||||| || ||||| | | | |||| Sbjct 1147 AAGCTGGCTCTTGAATGCGCCTCCAAGAGAATGTATCCGGATATTCTGAACTACGATCAG 1088 Query 155570 CTAATAACCGCGCTATTACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTTGTCGCAGTT 155629 | | | | |||| |||| | ||| | |||| ||||| || ||| | Sbjct 1087 GTTGTGAAGG-----TTACCGGTT----CATTCAAG--ACTCCGATGGGCTGCCGCTCAT 1039 Query 155630 TCCTTAGCGTGTGGCATGATGATAACGGTAATGAAATTCTGGATGGACGTAATAATCTGG 155689 |||| || | |||| || |||||| | | || | || || ||||| ||||||| Sbjct 1038 TCCT---CGCCCCGTATGAGGAGAACGGTGTTCAGATCCACGACGGCCGTAACAATCTGG 982 Query 155690 GTGTGGTGACAATCAACCTCCCACGTATTGCGATCGAAGCCGAAGCACAGGAAGAAGAAG 155749 ||||||| | | || || || ||||| || || || ||| ||| || | | || Sbjct 981 GTGTGGTAAGTCTGAATCTGCCTCGTATCGCCATTGAGGCC-AAG----GG--GGATGAG 929 Query 155750 ACGCACACGATGCATTTTGGCGTATCCTTGATGAACGTCTGGATCTTTGTTACGATGCTC 155809 || || ||| | ||||| | |||||||||| | | || | | || | Sbjct 928 AC-CA-------AATTCTACAAGATCCTCGGTGAACGTCTGAACATCTGCAAGAAGGCGC 877 Query 155810 TGATGACTCGTATCGAAAGCCTACGCGGTGTTAAAGCCAGTGTAGCCCCGATCCTGTACA 155869 || || ||||| | | || |||||| || || |||| ||||||||||| |||| Sbjct 876 TGCTGTGCCGTATTGCCCGTCTGGACGGTGTGAAGGCACGTGTGGCCCCGATCCTCTACA 817 Query 155870 CAGAAGGTGCGTTTGGTGTACGCCTGAAACCGGATGATGAAATTCTGGAACTGTTCAAAA 155929 || ||||| | ||||| ||||| || | || || || || | | ||||| | Sbjct 816 TGGAGGGTGCCTGCGGTGTCCGCCTTAAGGCTGACGAGGATATATCCAAGATTTTCAAGA 757 Query 155930 ATGGGCGTAGTTC--TATCAGTCTGGGCTATATCGGGCTGCATGAAAC 155975 | |||||| || |||| |||||| |||||||| | ||||| || Sbjct 756 ACGGGCGTGCGTCCGTATC--TCTGGGTTATATCGGTATTCATGAGAC 711 >seq2619 Length=11042 Score = 87.8 bits (96), Expect = 2e-12 Identities = 174/254 (69%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 40057 GGATCATCGTTTCCGCCTGGAACCCTGTTGATCTTGATGATATGGCTTTGCGTCCGTGTC 40116 ||||||||||||| |||||||| | | || ||||| | ||||| || ||| |||| Sbjct 2563 GGATCATCGTTTCAGCCTGGAATGCCGGAGAAATTGATAAGATGGCATTAGCTCCTTGTC 2504 Query 40117 ACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTT 40176 | | | |||||||| ||| | || ||| | ||| |||| ||||||||| Sbjct 2503 ATGCTCTTTTCCAGTTTTATGTAGTTAATAACAAATTATCTTGCCAGTTGTATCAGCGAA 2444 Query 40177 CAGTTGATGTC-TTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGACGCAT 40235 ||||||| ||||| | ||| || |||||||| || || ||||| || || ||| Sbjct 2443 GCTGTGATGTCTTTCTTGGTGTT-CCTTTCAATATTGCTAGTTATGCTCTTCTTACTCAT 2385 Query 40236 ATTATCGCTGATATTTGCGGGTATGAAGTGGGTGATCTGGTTTGGACTGGTGGCGATGTC 40295 || || || | |||| ||| || |||||| | |||||||| || || ||||| Sbjct 2384 ATGATGGCGCAGCAGTGCGATCTTGATGTTGGTGATTTTGTTTGGACCGGCGGAGATGTT 2325 Query 40296 CA--TATCTACAAA 40307 || ||| | |||| Sbjct 2324 CACTTATATTCAAA 2311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565557550477920