Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_014595.1 Length=170605 Score E Sequences producing significant alignments: (Bits) Value seq2964 105 7e-18 >seq2964 Length=2227 Score = 105 bits (116), Expect = 7e-18 Identities = 420/652 (64%), Gaps = 12/652 (2%) Strand=Plus/Plus Query 39981 ATATCAGGATACATTCTTTTGCTTGCACACTCTAAAGCAAGCTGCTTAATATCATAGTTT 40040 ||||| ||||||||||| ||| || || || | ||| |||| ||| ||||| ||||| Sbjct 1104 ATATCCGGATACATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTTA 1163 Query 40041 GGGTCGTCTTTATAAAGATTAACACCTTCTTCAACGAACATAACAAGTTTAGGGAAAATA 40100 || || | | | | | || | || || | | | | || || |||||||||| Sbjct 1164 GGATCACCCTCTTTACGGTTCAGTCCCTCCTTGATGGCAAACACCAGCTTAGGGAAAACC 1223 Query 40101 GGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATC 40160 | |||| | || || || ||||| ||| | || |||||||| | ||||| ||| Sbjct 1224 GCAGTTCTGTGATTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGGATC 1283 Query 40161 ATTCGTTCGGTCCAGTCAGTTCCGGTACCAAATGTAATTGTCACAAAAGGAGTCTGACCA 40220 | ||| |||| ||||| ||| || | || || || ||||||||||| Sbjct 1284 AGACGTGACTCCCAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGACCG 1343 Query 40221 TTTGAGCTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGTCT 40280 || ||| || || || ||||||||||||||| || ||||| || || || || Sbjct 1344 TTGGAGGTATGCAGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCACTCC 1403 Query 40281 TTTTCTGTTTTAGATTGGGCATAATTCAACGCATCAGTGATTTGCCATTTTTCCGCGTCC 40340 ||||| || | | ||||| | | || ||||| || ||||| | || || | Sbjct 1404 TTTTCAGTACGGGCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCATC 1463 Query 40341 TCAATATGTTTCGCATAGGTACGTT---TAACATAAGGAGAAAGTACTTTATCTACATTC 40397 | || || ||| | || | ||||||| || | ||| || | ||| ||| Sbjct 1464 TTCTGATACTT--CAT-GAAACTCTTGGTAACATACGGGGCAAGCACCTCATC-ACAGCG 1519 Query 40398 G-CAAAAGTCGTTCCGCCATATTGATGGGAAGCAACCTGCGCAGTAATTTGTGCCATAAT 40456 | | || || ||||| || |||| |||||||| || | || ||||| ||| Sbjct 1520 GTTGATGGTTGTACCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGTAAC 1579 Query 40457 TGCAGTAGCAACACTGATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGTTTAAATCC 40516 || || || ||||||||| ||||| | ||| || | |||||||| | || || || Sbjct 1580 CGCGGTTGCGGTACTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAAACC 1639 Query 40517 GTTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAAT--GGAAGAGCAGGG 40574 | || |||||||| | ||| | | | || | | | | || |||||| | || Sbjct 1640 GCGTTCCAGCATTCCGCCGACATCGA-TCAGCATACAGTTGAACATCGGGAAGAAC-GGT 1697 Query 40575 GAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGTGCTTTCATAA 40626 ||||| || | ||| || ||||| || || |||||||| ||| ||| || Sbjct 1698 GAATAGTCGAGATCGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAA 1749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545773211562600