Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq2964 208 1e-48 seq4581 96.9 5e-15 seq3706 86.0 9e-12 seq3152 86.0 9e-12 seq2220 84.2 3e-11 seq1835 84.2 3e-11 >seq2964 Length=2227 Score = 208 bits (230), Expect = 1e-48 Identities = 768/1189 (65%), Gaps = 22/1189 (2%) Strand=Plus/Plus Query 123924 TTCAGACGAACACCACAAGCACCTTCAACATAAAGAATCGGAGCAACGCTTGCCTTGACA 123983 || || || ||||| || ||||| || | || || ||||| || || | |||||| ||| Sbjct 789 TTAAGGCGGACACCGCAGGCACCCTCCATGTAGAGGATCGGGGCCACACGTGCCTTCACA 848 Query 123984 CCACGCAGACGATCAACGCGAGTCAACAAAGCTTTCTTAACGATTTCCATACGCTCTTCC 124043 || |||||| ||| || || || || ||||| ||| | || ||| || | Sbjct 849 CCGTCCAGACGGGCAATACGGCACAGCAGCGCCTTCTTGCAGATGTTCAGACGTTCACCG 908 Query 124044 AGAATTTCAAAGAAGCGCATTTGATTGCCGTTTGCGTCGAGTGCGATACGCGGCAAGTTC 124103 || || | |||| | | || || || || || | |||||||| |||| ||| Sbjct 909 AGGATCTTGTAGAATTTGGTCTCATCCCCCTTGGCCTCAATGGCGATACGAGGCAGATTC 968 Query 124104 AGAGTAACAACACCGAGATTGTTTCTGCCTTCATGAACTTCATTACCGGTTTCGTCTTCC 124163 ||| | || ||||| |||||||| | ||| || || | | | |||| | || || | | Sbjct 969 AGACTTACCACACCCAGATTGTTACGGCCGTCGTGGATCTGAACACCGTTCTCCTCATAC 1028 Query 124164 CAGCGATGCAAGAAACTA-CGGCATCCCATAGGGAACTTAAAGCTACCAGTCACTTCTAC 124222 | || || || | ||||| ||||| || ||| || ||| || || | || Sbjct 1029 GGG----GCGAGGAATGAGCGGCAGCCCATCGGAGTCTTGAATGAACCGGTAACCTTCAC 1084 Query 124223 CACTTTATCATAACTCAAGATGTCTGGATACATACGCTTGGCAGCGCACTCCAGTGCCAT 124282 || | ||| || ||| || || |||||||| | ||||| ||||| || || |||| Sbjct 1085 AACCTGATCGTAGTTCAGAATATCCGGATACATTCTCTTGGAGGCGCATTCAAGAGCCAG 1144 Query 124283 CTGTTTGATACGATACAGAGGATCAGTTGGTTTCAAGTTGTGTCCGTCTTTCAGCGCGAA 124342 || |||||| || ||||||| ||| ||| |||| || || | || || Sbjct 1145 CTTCTTGATATCGTAGTTAGGATCACCCTCTTTACGGTTCAGTCCCTCCTTGATGGCAAA 1204 Query 124343 AACAAGTTTCGGGAAAACGGGAGTAATACCTTCTTTGCCAAGACCTTTCATCCGAACTTT 124402 || || || |||||||| | ||| | | ||| ||||| || | || Sbjct 1205 CACCAGCTTAGGGAAAACCGCAGTTCTGTGATTGCGGCCGAGACCAGCAATTCTGTTCTT 1264 Query 124403 CAGAATTGCTTCCTGAATGAGTTCGGATTCCCAGCTAGTGCCTAGTCCAAACCCGAAAGT 124462 |||||| | | ||| || || || |||||| || || || || || |||| ||| Sbjct 1265 CAGAATAGACTTCTGGATCAGACGTGACTCCCAGGATGTTCCCAGACCGAAACCGAGAGT 1324 Query 124463 GCAGAATGGAGTTTGACCATTTGCCGAGTGCAGAGTGTTTACCTCATACTCTAGGCTTTG 124522 ||| ||||| ||||| || | | ||||| |||||||| ||||| || || || Sbjct 1325 TACGAACGGAGTCTGACCGTTGGAGGTATGCAGGGTGTTTACTTCATATTCAAGAGACTG 1384 Query 124523 CATTGCATCATA-CACGGCTTTGCGAGTCTTTTCAATAGCGTATTGCCTTT--GATCTGG 124579 | || ||||| ||| |||| | ||| | | | | | || | |||| || Sbjct 1385 GAAGGCGTCATAGCACTCCTTTTC-AGTACGGGC--TCGGGCAAAGCTGTCCGGATCAGG 1441 Query 124580 AATTTTCCAATAA-CGCGCTTCATCCAAATGCTTTTCATGTG--TCATCTTAACATAAGG 124636 ||| | ||| | || | || || | | ||| |||| || | ||||||| || Sbjct 1442 AATGTGCCACTCCTCGGCCATCTTCTGA-TACTT--CATGAAACTCTTGGTAACATACGG 1498 Query 124637 TGCCAATGCTTCGTCAATGCGATTAATTGTGTTGCCACCATAAATGTGACTTGCAACCTG 124696 || | | || ||| ||| || || || | || || || || || || |||||||| Sbjct 1499 GGCAAGCACCTCATCACAGCGGTTGATGGTTGTACCGCCGTAGATATGGCTGGCAACCTG 1558 Query 124697 TGCAATGATTTGAGCAGTAACAGCCGCAGCGGTAGCGATGCTCTTAGGAGTTTCGATCTG 124756 || ||||| || || ||||| || | |||||| ||| |||||| | |||||| | Sbjct 1559 GGCGATGATCTGTGCGGTAACCGCGGTTGCGGTACTGATTGACTTAGGTGATTCGATTTC 1618 Query 124757 TGCATTACCCATGCGGAACCCACGCTCTAACATGCCGTTGAGATCAATCAACATGCAGTT 124816 ||||||||||| ||| || || || | ||| ||| || ||| |||| ||| ||||| Sbjct 1619 GGCATTACCCATCTTGAAACCGCGTTCCAGCATTCCGCCGACATCGATCAGCATACAGTT 1678 Query 124817 AAACATTGGGAAGAACGGAGAGTAATCAAGATCATGGAAGTGAATAAAACCAGCTTCGTG 124876 ||||| ||||||||||| || || || ||||| || || || || || ||| || Sbjct 1679 GAACATCGGGAAGAACGGTGAATAGTCGAGATCGTGAAAATGGATCTCCCCTCTTTCATG 1738 Query 124877 TGCTTGCAGAACTTCGGTCGGCAGATAGTGC---TTTGCAAAGT-GCTTGCTTACTATGC 124932 ||| || |||||| || || |||| |||||| ||| || ||| || || | Sbjct 1739 GGCTCTCACAACTTCCTGAGGAAGCATGTGCTGTTTTGCATAGTGGCGTGC-AACAATAC 1797 Query 124933 CCGCGACTAAATCGCGTTGTGTCGGAATAACTTTTGCATCTTTGTTTGCATTCTCATTCA 124992 | || | | || || || ||||||||||| || || ||||| |||||||| || | Sbjct 1798 CTGCAAGAAGGTCACGCTGGGTCGGAATAACCTTGCTGTCCTTGTTGGCATTCTCGTTAA 1857 Query 124993 TGATCCCTTCGTCTTCTTGCTTCATCAGTCCGACGATTCGCTTGGTCATATCGCTGTTCA 125052 | || | | | || | |||||||| ||| || | ||| | ||| ||| Sbjct 1858 GCAGATCTGCATTTGACTGATCGATCAGTCCCTTGATCTCCTGGCTCAGAGCGCCTTTCT 1917 Query 125053 TATCGCGAGCAACGTCACGATCATAGCGGTATTCGATGTAGGCGCGAGC 125101 | || || | ||| | |||| |||||| ||||| ||||| || || Sbjct 1918 TTTCACGCAGACGGTCTCTTTCATGGCGGTACTCGATATAGGCACGGGC 1966 >seq4581 Length=24368 Score = 96.9 bits (106), Expect = 5e-15 Identities = 72/83 (87%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 191315 ATTGGCGGGGGTAGCTGGACTCGAACCAGCGAA-TGACGGAATCAAAATCCGTTGCCTTT 191373 |||||| ||||||||||||||||||||| |||| || | || ||| | || | |||||| Sbjct 12329 ATTGGCAGGGGTAGCTGGACTCGAACCAACGAAATGCCAGATTCAGAGTCTGGTGCCTTA 12270 Query 191374 CCAACTTGGCGATACCCCTATAA 191396 ||||||||||||||||||||||| Sbjct 12269 CCAACTTGGCGATACCCCTATAA 12247 >seq3706 Length=88543 Score = 86.0 bits (94), Expect = 9e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 193688 AGCGGGAGGTGGATTTGAACCACCGACCTTTAGCTTATGAGGCTAACGAGATTCCAGACT 193747 |||||| || ||||||||||||||||||||| | ||||||| | |||||| | || |||| Sbjct 6154 AGCGGGGGGCGGATTTGAACCACCGACCTTTGGGTTATGAGCCCAACGAGCTACCGGACT 6213 Query 193748 TCTCCATCCCGCTTCAT 193764 ||||| ||||| |||| Sbjct 6214 GCTCCACCCCGCATCAT 6230 >seq3152 Length=23011 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 193019 GACAATGGGACTCGAACCCACGACCCCCAGCTTGCAAGGCTAGTGCTCTCCCAACTGAGC 193078 || || ||| ||| ||||| |||||||||||||| |||||||||||||| ||||||||| Sbjct 2626 GAAAACGGGGCTCAAACCCGCGACCCCCAGCTTGGAAGGCTAGTGCTCTATCAACTGAGC 2567 Query 193079 TATATCCCCAAA 193090 ||| ||| |||| Sbjct 2566 TATTTCCGCAAA 2555 >seq2220 Length=4989 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 193010 TTTGGTGGAGACAATGGGACTCGAACCCACGACCCCCAGCTTGCAAGGCTAGTGCTCTCC 193069 |||||||| ||||| || |||||||| ||||||| ||||| ||||| ||||||||| Sbjct 4164 TTTGGTGGGGACAACAGGGCTCGAACCTGTGACCCCCTGCTTGTAAGGCAGGTGCTCTCC 4105 Query 193070 CAACTGAGCTATATCCCCA 193088 || |||||||||| ||||| Sbjct 4104 CAGCTGAGCTATACCCCCA 4086 >seq1835 Length=5127 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 193689 GCGGGAGGTGGATTTGAACCACCGACCTTTAGCTTATGAGGCTAACGAGATTCCAGACTT 193748 |||||||||||||||||||||||||||| | ||||||| | |||| ||||||||| Sbjct 4968 GCGGGAGGTGGATTTGAACCACCGACCTCCGGGTTATGAGCCCGGCGAGCTTCCAGACTG 5027 Query 193749 CTCCATCCCGC 193759 ||||||||||| Sbjct 5028 CTCCATCCCGC 5038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720683662497120